Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   AB1F71_RS02335 Genome accession   NZ_CP160386
Coordinates   445576..447960 (+) Length   794 a.a.
NCBI ID   WP_002263043.1    Uniprot ID   Q8CWY3
Organism   Streptococcus mutans strain UA159 ykuR deletion     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 440576..452960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F71_RS02315 (AB1F71_02315) luxS 441880..442362 (-) 483 WP_002263047.1 S-ribosylhomocysteine lyase Regulator
  AB1F71_RS02320 (AB1F71_02320) - 442507..444114 (+) 1608 WP_002263046.1 ribonuclease Y -
  AB1F71_RS02325 (AB1F71_02325) gmk 444561..445193 (+) 633 WP_002263045.1 guanylate kinase -
  AB1F71_RS02330 (AB1F71_02330) rpoZ 445217..445534 (+) 318 WP_002263044.1 DNA-directed RNA polymerase subunit omega -
  AB1F71_RS02335 (AB1F71_02335) priA 445576..447960 (+) 2385 WP_002263043.1 primosomal protein N' Machinery gene
  AB1F71_RS02340 (AB1F71_02340) fmt 448020..448955 (+) 936 WP_002263042.1 methionyl-tRNA formyltransferase -
  AB1F71_RS02345 (AB1F71_02345) rsmB 448936..450258 (+) 1323 WP_002291122.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AB1F71_RS02350 (AB1F71_02350) - 450297..451040 (+) 744 WP_002263040.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  AB1F71_RS02355 (AB1F71_02355) pknB 451037..452887 (+) 1851 WP_002263039.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 90484.56 Da        Isoelectric Point: 9.6879

>NTDB_id=917992 AB1F71_RS02335 WP_002263043.1 445576..447960(+) (priA) [Streptococcus mutans strain UA159 ykuR deletion]
MTKIAKVIVDVPLMQTDKPFSYKIPEALLSVITAGSRVHVPFGKGNRLLQGFVVSVDSGSAQHLKTIIDVLDVEPVLNQE
QLELADQMRKTVFSYKISILKSMIPNLLNSNYDRLLKPKKGLSQEEKDLIFAGKKQINFSQLNQEIQTKSLSLIQAGKID
IEYLAKDRKTIKTQKCYDVNLEKLSHLLINKRAKKRQELKDYLANHPQSGPLSDLYRLFSREVVHYFIKEAVLNISQVEV
NRTQSYFENIIQSDFLDLNPEQQTAVEQITAAIGSSNKPYLLEGITGSGKTEVYLHVIDQTLKLGKTAIVLVPEISLTPQ
MTSRFISRFGSQVAIMHSGLSDGEKFDEWRKMKSNQAKVVVGARSAIFSPLKNIGAIIIDEEHEATYKQESSPRYHAREV
ALLRAQYHQAVLVLGSATPSIESRARASRGVYNFLQLSQRANPQAHIPKVKIVDFRDYIGQQKVSNLTPVLLDKIKDRLI
KKEQVVLMLNRRGYSSFIMCRDCGYVDNCPNCDISLTLHMDTKTMNCHYCGFLKGIPYNCPNCQSRQIRYYGTGTQKAYD
ELKQVLPEARILRMDVDTTKRKGAHEKILTKFGRHEADILLGTQMIAKGLDFPNVTLVGVLNADTSLNLPDFRSSERTFQ
LLTQVAGRAGRANKPGEVLIQTYNPNHYAIQLAREQDYEAFYRYEMRIRKALSYPPYYFTVGLTLSHKDEQEVIKKSYEI
VTLIKEGLTDKIKILGPTPKPVARTHNLYHYQIIIKYRFEDQLEIVLNHILDLTQAKENKKLRLIIDHEPQSFM

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=917992 AB1F71_RS02335 WP_002263043.1 445576..447960(+) (priA) [Streptococcus mutans strain UA159 ykuR deletion]
ATGACAAAAATTGCAAAGGTCATTGTAGATGTGCCCTTAATGCAAACAGATAAGCCCTTTTCTTATAAAATTCCAGAGGC
ATTATTATCAGTGATTACAGCAGGTTCACGTGTTCATGTTCCTTTTGGTAAAGGAAATCGATTATTACAAGGGTTTGTAG
TAAGTGTAGATAGTGGATCAGCTCAGCATTTAAAAACAATTATTGACGTTTTAGATGTGGAACCGGTGCTTAATCAGGAG
CAGTTGGAATTAGCAGATCAAATGCGTAAAACGGTTTTTTCTTATAAGATTTCTATTTTGAAATCAATGATTCCAAATCT
CTTAAATTCTAATTATGATCGTTTGCTGAAACCTAAAAAAGGGCTATCTCAGGAAGAAAAGGACTTAATTTTTGCTGGTA
AAAAACAGATAAATTTTTCGCAACTGAATCAAGAAATACAGACTAAAAGTTTAAGCTTGATACAGGCTGGTAAAATTGAT
ATAGAATATTTAGCCAAGGATAGAAAGACAATTAAAACGCAAAAATGTTATGATGTTAATCTTGAAAAGTTATCTCATCT
TCTTATCAATAAGCGAGCTAAAAAGCGGCAAGAACTGAAAGATTATCTTGCTAATCATCCGCAGTCCGGTCCTCTTTCGG
ATCTGTATCGGCTTTTTTCAAGAGAGGTTGTTCATTATTTTATAAAAGAAGCTGTTCTCAATATTTCACAAGTAGAAGTG
AATCGTACCCAAAGCTATTTTGAAAATATTATTCAATCTGATTTTCTTGATTTAAACCCAGAACAGCAAACAGCAGTAGA
GCAAATAACAGCTGCTATTGGTTCTTCTAATAAGCCTTATCTGCTTGAAGGAATTACAGGAAGCGGAAAAACAGAGGTTT
ATCTCCATGTTATTGATCAGACTTTGAAATTAGGTAAAACAGCCATTGTTCTAGTTCCTGAGATTTCGTTAACACCTCAG
ATGACTAGTCGCTTTATTTCTCGCTTTGGCAGTCAAGTTGCTATCATGCATTCGGGCTTGTCTGATGGTGAAAAATTCGA
TGAGTGGCGTAAAATGAAATCCAATCAAGCTAAAGTTGTTGTTGGAGCGCGCTCAGCTATTTTCTCTCCTTTAAAAAATA
TTGGTGCTATCATTATTGATGAAGAGCACGAGGCAACTTATAAACAAGAGTCTAGTCCACGCTATCATGCGCGGGAGGTG
GCACTATTGCGTGCCCAATATCATCAGGCAGTTTTAGTCTTAGGCAGTGCGACGCCATCTATTGAGAGCCGAGCGCGAGC
CAGCCGTGGTGTTTATAACTTCCTGCAGCTAAGTCAAAGGGCCAATCCTCAAGCACACATTCCCAAGGTAAAAATTGTAG
ATTTTCGTGATTATATCGGTCAGCAAAAAGTGAGTAATTTAACACCTGTTCTGCTAGATAAAATTAAAGATCGTCTAATA
AAAAAGGAACAGGTCGTTCTTATGCTTAATCGTCGCGGGTATTCTAGTTTTATTATGTGCCGTGACTGCGGTTATGTTGA
TAACTGTCCTAATTGTGATATCTCCTTAACTTTACACATGGATACCAAAACAATGAATTGTCACTATTGTGGCTTTTTAA
AAGGAATTCCTTACAACTGTCCTAATTGTCAAAGTCGGCAAATTCGTTATTATGGAACGGGAACGCAAAAAGCTTATGAT
GAATTAAAACAAGTTTTGCCAGAAGCACGCATTTTACGGATGGATGTTGATACAACCAAAAGAAAGGGAGCGCATGAGAA
GATTCTGACGAAATTTGGTCGTCATGAAGCTGATATTCTTTTAGGAACGCAAATGATTGCCAAAGGACTTGATTTTCCTA
ATGTTACTTTGGTTGGTGTATTAAATGCAGATACTTCACTTAATTTGCCGGATTTTCGCTCAAGTGAGCGTACTTTTCAA
CTTTTAACACAGGTGGCAGGACGCGCAGGCCGTGCAAATAAACCGGGTGAGGTTTTGATTCAAACCTATAATCCTAATCA
TTATGCTATTCAGTTGGCAAGGGAACAGGACTATGAAGCTTTTTATCGCTACGAAATGAGAATTCGTAAGGCACTTTCCT
ACCCACCCTACTATTTCACAGTTGGCTTAACTCTATCACATAAAGATGAGCAAGAGGTTATCAAAAAATCTTATGAGATA
GTGACGTTGATCAAGGAAGGACTGACAGATAAGATTAAAATATTGGGTCCAACACCCAAACCTGTCGCTAGGACGCATAA
TCTTTATCATTATCAAATTATCATTAAGTATCGTTTTGAAGACCAGTTGGAGATTGTTTTAAATCATATTTTAGATTTAA
CTCAAGCTAAAGAAAATAAAAAGTTACGTTTGATTATTGATCATGAGCCACAAAGTTTTATGTAA

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(6-105)

Primosomal protein N C-terminal domain (PriA_C)

(696-790)

Type III restriction enzyme, res subunit (ResIII)

(257-420)

Helicase conserved C-terminal domain (Helicase_C)

(568-653)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(509-532)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8CWY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Bacillus subtilis subsp. subtilis str. 168

46.774

100

0.475