Detailed information NTG0917798

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: QRP18_RS05800
• Genome accession: NZ_CP160382
• Coordinates: 1244574..1245863 (+)
• Length: 429 a.a.
• NCBI ID: WP_043043278.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain ST110-8
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1239574..1250863

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRP18_RS05785 (QRP18_05785)	lrp	1240073..1240567 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
QRP18_RS05790 (QRP18_05790)	-	1240720..1243806 (+)	3087	WP_110176882.1	DNA translocase FtsK 4TM domain-containing protein	-
QRP18_RS05795 (QRP18_05795)	lolA	1243881..1244507 (+)	627	WP_005460060.1	outer membrane lipoprotein chaperone LolA	-
QRP18_RS05800 (QRP18_05800)	rarA	1244574..1245863 (+)	1290	WP_043043278.1	replication-associated recombination protein A	Machinery gene
QRP18_RS05805 (QRP18_05805)	serS	1245955..1247262 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
QRP18_RS05810 (QRP18_05810)	-	1247632..1248198 (+)	567	WP_021453009.1	hypothetical protein	-
QRP18_RS05815 (QRP18_05815)	-	1248192..1248632 (+)	441	WP_086483756.1	hypothetical protein	-
QRP18_RS05820 (QRP18_05820)	-	1248767..1249066 (+)	300	WP_110176880.1	DksA/TraR family C4-type zinc finger protein	-
QRP18_RS05825 (QRP18_05825)	bioA	1249102..1250382 (-)	1281	WP_110176878.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47621.81 Da
• Isoelectric Point: 5.8544

>NTDB_id=917798 QRP18_RS05800 WP_043043278.1 1244574..1245863(+) (rarA) [Vibrio parahaemolyticus strain ST110-8]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGNTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEENDQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=917798 QRP18_RS05800 WP_043043278.1 1244574..1245863(+) (rarA) [Vibrio parahaemolyticus strain ST110-8]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGTGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCGTCTTTCGAACTGAACAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGGCTGGGCAATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
TGATGCTCGCATGTCTCTTAACTACCTTGAGCTTCTCTACGATATGGCAGAAGAGAATGATCAAGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGCCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGTGTTGGTCCAGCAGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (169-248)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385