Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | OCV52_RS00625 | Genome accession | NZ_AP025465 |
| Coordinates | 140801..141514 (-) | Length | 237 a.a. |
| NCBI ID | WP_171730403.1 | Uniprot ID | - |
| Organism | Vibrio chagasii strain LMG 21353 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 135801..146514
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV52_RS00610 | cysQ | 138403..139230 (-) | 828 | WP_137406354.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| OCV52_RS00615 | nudE | 139266..139817 (-) | 552 | WP_137406353.1 | ADP compounds hydrolase NudE | - |
| OCV52_RS00620 | nfuA | 140107..140691 (-) | 585 | WP_004741449.1 | Fe-S biogenesis protein NfuA | - |
| OCV52_RS00625 | comF | 140801..141514 (-) | 714 | WP_171730403.1 | ComF family protein | Machinery gene |
| OCV52_RS00630 | bioH | 141608..142384 (+) | 777 | WP_137406352.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| OCV52_RS00635 | - | 142561..143034 (+) | 474 | WP_061033121.1 | hypothetical protein | - |
| OCV52_RS00640 | - | 143160..145490 (-) | 2331 | WP_137406351.1 | Tex family protein | - |
Sequence
Protein
Download Length: 237 a.a. Molecular weight: 27069.32 Da Isoelectric Point: 8.8701
>NTDB_id=91722 OCV52_RS00625 WP_171730403.1 140801..141514(-) (comF) [Vibrio chagasii strain LMG 21353]
MLSDWLQKHTPRLVTPQCHLCKLDKQPNDHHPRWCDSCLKLFELVPRCQRCGLKTVTAVEQCGECLAAPPPWHRLYCVGD
YTFPTAGYIQQMKYADKFWFARDLSTLLASRIEEPASLVTSVPLHWRRYFHRGFNQSQLLARYTAQDLKVEHAVLFKRIR
STGSQQGLTKSARKSNLKGAFAMKNTSFSAMDYSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG
MLSDWLQKHTPRLVTPQCHLCKLDKQPNDHHPRWCDSCLKLFELVPRCQRCGLKTVTAVEQCGECLAAPPPWHRLYCVGD
YTFPTAGYIQQMKYADKFWFARDLSTLLASRIEEPASLVTSVPLHWRRYFHRGFNQSQLLARYTAQDLKVEHAVLFKRIR
STGSQQGLTKSARKSNLKGAFAMKNTSFSAMDYSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG
Nucleotide
Download Length: 714 bp
>NTDB_id=91722 OCV52_RS00625 WP_171730403.1 140801..141514(-) (comF) [Vibrio chagasii strain LMG 21353]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGTCACCTCTGCAAGCTAGATAAACAGCC
TAATGATCACCACCCTCGATGGTGTGATAGTTGCCTAAAACTGTTCGAGCTCGTGCCTCGCTGTCAAAGGTGCGGACTGA
AAACGGTCACAGCCGTCGAGCAATGCGGTGAGTGCTTGGCTGCCCCACCCCCTTGGCATCGGCTCTATTGTGTTGGTGAT
TACACCTTTCCAACCGCAGGCTATATCCAACAGATGAAGTATGCCGATAAATTCTGGTTTGCTCGAGATTTGTCGACCTT
GCTCGCGTCACGCATCGAAGAACCAGCATCTCTCGTCACCAGTGTTCCCTTACATTGGCGTCGATACTTTCATCGTGGTT
TTAATCAAAGTCAGCTACTGGCGCGTTACACCGCTCAAGACCTCAAGGTGGAGCATGCCGTTTTATTCAAGCGCATCCGT
TCAACCGGTTCGCAGCAAGGGCTAACTAAATCAGCCAGAAAAAGTAATTTGAAAGGTGCATTCGCGATGAAAAACACCAG
CTTCTCAGCGATGGATTACTCGCATGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACTGTGTATCAATTATGCC
AATTATTACTTGAAGTAGGGGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGTCACCTCTGCAAGCTAGATAAACAGCC
TAATGATCACCACCCTCGATGGTGTGATAGTTGCCTAAAACTGTTCGAGCTCGTGCCTCGCTGTCAAAGGTGCGGACTGA
AAACGGTCACAGCCGTCGAGCAATGCGGTGAGTGCTTGGCTGCCCCACCCCCTTGGCATCGGCTCTATTGTGTTGGTGAT
TACACCTTTCCAACCGCAGGCTATATCCAACAGATGAAGTATGCCGATAAATTCTGGTTTGCTCGAGATTTGTCGACCTT
GCTCGCGTCACGCATCGAAGAACCAGCATCTCTCGTCACCAGTGTTCCCTTACATTGGCGTCGATACTTTCATCGTGGTT
TTAATCAAAGTCAGCTACTGGCGCGTTACACCGCTCAAGACCTCAAGGTGGAGCATGCCGTTTTATTCAAGCGCATCCGT
TCAACCGGTTCGCAGCAAGGGCTAACTAAATCAGCCAGAAAAAGTAATTTGAAAGGTGCATTCGCGATGAAAAACACCAG
CTTCTCAGCGATGGATTACTCGCATGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACTGTGTATCAATTATGCC
AATTATTACTTGAAGTAGGGGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Vibrio cholerae strain A1552 |
54.661 |
99.578 |
0.544 |
| comF | Vibrio campbellii strain DS40M4 |
50 |
100 |
0.515 |