Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV19_RS15465 Genome accession   NZ_AP025463
Coordinates   3444776..3445489 (+) Length   237 a.a.
NCBI ID   WP_167352281.1    Uniprot ID   A0A1C3JBX6
Organism   Vibrio celticus strain CECT 7224     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3439776..3450489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS15450 - 3440507..3442837 (+) 2331 WP_065675971.1 Tex family protein -
  OCV19_RS15455 - 3443091..3443564 (-) 474 WP_065675970.1 ATP-dependent Lon protease -
  OCV19_RS15460 bioH 3443906..3444682 (-) 777 WP_065675969.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV19_RS15465 comF 3444776..3445489 (+) 714 WP_167352281.1 ComF family protein Machinery gene
  OCV19_RS15470 nfuA 3445600..3446184 (+) 585 WP_029405734.1 Fe-S biogenesis protein NfuA -
  OCV19_RS15475 nudE 3446472..3447023 (+) 552 WP_019826462.1 ADP compounds hydrolase NudE -
  OCV19_RS15480 cysQ 3447060..3447887 (+) 828 WP_017062477.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV19_RS15485 - 3447990..3448769 (-) 780 WP_065675967.1 type II secretion system protein N -
  OCV19_RS15490 - 3448771..3449259 (-) 489 WP_019826466.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27106.45 Da        Isoelectric Point: 9.0207

>NTDB_id=91713 OCV19_RS15465 WP_167352281.1 3444776..3445489(+) (comF) [Vibrio celticus strain CECT 7224]
MLSDWLQKHTPRLVTPQCHLCKLDKLPEDAHPRWCNSCLKLFEPVPRCQRCGLKTITTVDQCGECLANPPLWHRLYCVGD
YTFPTAGYIQQMKYADKFWFSRDLSKLLASRIDQPAPLLTSVPLHWRRYTHRGFNQSQLLANYTAQELGVKSDVLFRRIR
STASQQGLTKSARLHNLKSAFALRKQDFQGMVPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=91713 OCV19_RS15465 WP_167352281.1 3444776..3445489(+) (comF) [Vibrio celticus strain CECT 7224]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACCTATGTAAGCTCGATAAGCTTCC
CGAGGACGCACATCCTCGATGGTGCAATTCTTGTCTCAAGCTCTTTGAACCTGTACCACGCTGTCAAAGATGTGGCTTAA
AAACCATCACCACTGTCGATCAATGTGGTGAATGCTTAGCTAATCCTCCGCTTTGGCATCGGCTCTATTGCGTCGGTGAT
TACACCTTCCCAACAGCAGGCTATATCCAACAAATGAAATACGCTGATAAGTTTTGGTTTTCACGTGATCTGTCTAAGCT
ATTGGCATCACGTATCGATCAACCTGCTCCGTTGCTCACCAGCGTACCGCTGCATTGGCGCCGATACACTCATCGTGGCT
TTAATCAAAGTCAGCTGCTAGCCAATTACACGGCTCAAGAGCTTGGCGTTAAAAGTGATGTGCTCTTTCGTCGAATTCGC
TCAACAGCTTCCCAGCAGGGGCTGACTAAATCCGCACGATTACACAATCTAAAGAGCGCTTTTGCGCTGAGAAAACAAGA
CTTTCAAGGAATGGTTCCCTCTCATGTCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3JBX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.932

99.578

0.557
  comF Vibrio campbellii strain DS40M4

50.204

100

0.519

Multiple sequence alignment