Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QZD84_RS01395 Genome accession   NZ_CP141290
Coordinates   288082..288807 (-) Length   241 a.a.
NCBI ID   WP_308386271.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 283082..293807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZD84_RS01370 - 284201..284692 (+) 492 WP_005458943.1 type II secretion system protein M -
  QZD84_RS01375 - 284694..285455 (+) 762 WP_005496730.1 type II secretion system protein N -
  QZD84_RS01380 cysQ 285741..286568 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QZD84_RS01385 nudE 286610..287179 (-) 570 WP_140082517.1 ADP compounds hydrolase NudE -
  QZD84_RS01390 nfuA 287400..287984 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  QZD84_RS01395 comF 288082..288807 (-) 726 WP_308386271.1 phosphoribosyltransferase family protein Machinery gene
  QZD84_RS01400 bioH 288892..289659 (+) 768 WP_029817775.1 pimeloyl-ACP methyl ester esterase BioH -
  QZD84_RS01405 - 289783..290247 (+) 465 WP_005459035.1 hypothetical protein -
  QZD84_RS01410 - 290381..292702 (-) 2322 WP_029855941.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27678.76 Da        Isoelectric Point: 8.7043

>NTDB_id=916959 QZD84_RS01395 WP_308386271.1 288082..288807(-) (comF) [Vibrio parahaemolyticus strain BM26A]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEETNIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQSISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=916959 QZD84_RS01395 WP_308386271.1 288082..288807(-) (comF) [Vibrio parahaemolyticus strain BM26A]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCAGAGGAAACAAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCACCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGAGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCACGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGCGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.58

98.755

0.49