Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   U4959_RS14675 Genome accession   NZ_CP141284
Coordinates   3037222..3037647 (-) Length   141 a.a.
NCBI ID   WP_324272875.1    Uniprot ID   -
Organism   Acinetobacter junii strain H1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3032222..3042647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4959_RS14645 (U4959_14645) - 3032632..3033675 (+) 1044 WP_125297303.1 lipase secretion chaperone -
  U4959_RS14650 (U4959_14650) - 3033781..3034752 (+) 972 WP_004909544.1 lipase family alpha/beta hydrolase -
  U4959_RS14655 (U4959_14655) rplS 3034811..3035182 (-) 372 WP_004660214.1 50S ribosomal protein L19 -
  U4959_RS14660 (U4959_14660) trmD 3035413..3036153 (-) 741 WP_004909546.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  U4959_RS14665 (U4959_14665) rimM 3036196..3036744 (-) 549 WP_324272874.1 ribosome maturation factor RimM -
  U4959_RS14670 (U4959_14670) rpsP 3036761..3037018 (-) 258 WP_004964546.1 30S ribosomal protein S16 -
  U4959_RS14675 (U4959_14675) comF 3037222..3037647 (-) 426 WP_324272875.1 type IV pilin protein Machinery gene
  U4959_RS14680 (U4959_14680) - 3037647..3038339 (-) 693 WP_324272876.1 type IV pilin protein -
  U4959_RS14685 (U4959_14685) - 3038350..3042051 (-) 3702 WP_324272877.1 pilus assembly protein PilC -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15466.59 Da        Isoelectric Point: 8.4210

>NTDB_id=916895 U4959_RS14675 WP_324272875.1 3037222..3037647(-) (comF) [Acinetobacter junii strain H1]
MKKYSLAFTLIELMIVVAIIGILAAIAYPSYTQYKIRTNRADVQSEMMQIAQRLQSYYVINHNYTNATLDNGTVSKAYPA
SGSVYTITLAPLDQTWTLTAVPTPSTVQDGNGAVVLNSQGQKCWEKGTTCSVSASSNWESR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=916895 U4959_RS14675 WP_324272875.1 3037222..3037647(-) (comF) [Acinetobacter junii strain H1]
ATGAAAAAATACTCTTTAGCATTTACTTTAATTGAATTAATGATTGTTGTCGCAATTATTGGCATTTTGGCAGCAATTGC
TTATCCATCTTACACACAGTACAAAATCCGTACCAATCGGGCAGATGTGCAGAGTGAAATGATGCAAATAGCCCAACGGT
TACAAAGTTATTATGTCATCAATCATAATTATACCAACGCAACATTGGACAATGGCACAGTGAGTAAAGCCTATCCTGCT
TCAGGAAGTGTATATACCATCACCCTTGCGCCACTCGATCAAACTTGGACGCTTACGGCAGTCCCAACCCCGAGTACAGT
TCAAGATGGCAATGGAGCAGTGGTGCTAAATAGCCAAGGACAAAAATGTTGGGAGAAAGGAACGACATGCAGTGTTTCTG
CTTCTTCAAATTGGGAAAGTCGTTAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-109)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

56.115

98.582

0.553
  pilE Acinetobacter baumannii D1279779

53.676

96.454

0.518