Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   U7118_RS13670 Genome accession   NZ_CP141283
Coordinates   2499754..2500533 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain DKU_09     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2494754..2505533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS13640 (U7118_13640) fliH 2494772..2495524 (-) 753 WP_014479782.1 flagellar assembly protein FliH -
  U7118_RS13645 (U7118_13645) fliG 2495517..2496533 (-) 1017 WP_324271303.1 flagellar motor switch protein FliG -
  U7118_RS13650 (U7118_13650) fliF 2496546..2498156 (-) 1611 WP_046160402.1 flagellar basal-body MS-ring/collar protein FliF -
  U7118_RS13655 (U7118_13655) fliE 2498202..2498522 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  U7118_RS13660 (U7118_13660) flgC 2498533..2498985 (-) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  U7118_RS13665 (U7118_13665) flgB 2498985..2499374 (-) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  U7118_RS13670 (U7118_13670) codY 2499754..2500533 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  U7118_RS13675 (U7118_13675) hslU 2500573..2501976 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  U7118_RS13680 (U7118_13680) clpQ 2501993..2502538 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  U7118_RS13685 (U7118_13685) xerC 2502551..2503465 (-) 915 WP_014479777.1 tyrosine recombinase XerC -
  U7118_RS13690 (U7118_13690) trmFO 2503533..2504840 (-) 1308 WP_069837510.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=916831 U7118_RS13670 WP_003220850.1 2499754..2500533(-) (codY) [Bacillus subtilis strain DKU_09]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=916831 U7118_RS13670 WP_003220850.1 2499754..2500533(-) (codY) [Bacillus subtilis strain DKU_09]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467