Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV30_RS22875 Genome accession   NZ_AP025460
Coordinates   124981..125694 (-) Length   237 a.a.
NCBI ID   WP_167351953.1    Uniprot ID   A0A1C3IRS6
Organism   Vibrio atlanticus strain CECT 7223     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 119981..130694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS00540 - 121135..121617 (+) 483 WP_065679091.1 type II secretion system protein M -
  OCV30_RS00545 - 121625..122404 (+) 780 WP_065679090.1 type II secretion system protein N -
  OCV30_RS00550 cysQ 122526..123353 (-) 828 WP_009848015.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV30_RS00555 nudE 123390..123941 (-) 552 WP_009848014.1 ADP compounds hydrolase NudE -
  OCV30_RS00560 nfuA 124287..124871 (-) 585 WP_009848013.1 Fe-S biogenesis protein NfuA -
  OCV30_RS22875 comF 124981..125694 (-) 714 WP_167351953.1 ComF family protein Machinery gene
  OCV30_RS00570 bioH 125788..126564 (+) 777 WP_065679089.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV30_RS00575 - 126739..127212 (+) 474 WP_009848010.1 hypothetical protein -
  OCV30_RS00580 - 127339..129669 (-) 2331 WP_065679088.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27166.50 Da        Isoelectric Point: 9.1709

>NTDB_id=91672 OCV30_RS22875 WP_167351953.1 124981..125694(-) (comF) [Vibrio atlanticus strain CECT 7223]
MLSDWLQKHTPRLVTPQCDLCKLDKSHSDTHPRWCNSCLKLFDPVPRCQRCGLKTLITVDQCGQCLSQPPPWHRLYCVGD
YSFPTAGYIQQMKYADKFWFARDLSKLLASRIEHPAPLITSVPLHWRRYIHRGFNQSQLLANYTARELGVKDEVLFRRIR
PTASQQGLTKSARLHNLKSAFTLRKQDFQGAIPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=91672 OCV30_RS22875 WP_167351953.1 124981..125694(-) (comF) [Vibrio atlanticus strain CECT 7223]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCGACCTGTGTAAGCTAGATAAGTCGCA
CAGCGATACTCACCCTAGATGGTGTAATTCTTGTCTCAAACTCTTTGATCCAGTTCCTCGCTGCCAACGATGTGGCTTAA
AAACACTGATCACAGTAGATCAGTGCGGGCAATGTTTATCACAGCCTCCACCTTGGCATCGTCTCTATTGTGTTGGGGAC
TACAGCTTTCCAACCGCAGGTTACATTCAGCAAATGAAGTACGCCGATAAGTTTTGGTTTGCACGCGATCTGTCAAAGTT
ATTGGCTTCACGTATCGAGCACCCTGCTCCGCTGATCACCAGTGTCCCTTTGCATTGGCGTCGATATATTCATCGTGGCT
TTAATCAAAGTCAGTTACTTGCTAATTACACAGCTCGAGAACTTGGCGTTAAAGATGAGGTGCTGTTCCGTCGAATTCGC
CCAACGGCTTCTCAGCAAGGGCTAACTAAATCCGCACGATTACACAATCTAAAGAGTGCTTTTACGCTTCGAAAACAAGA
CTTTCAAGGAGCTATCCCTTCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTAGGTGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3IRS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.303

100

0.565
  comF Vibrio campbellii strain DS40M4

50.82

100

0.523

Multiple sequence alignment