Detailed information NTG0916568

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: U6I89_RS13960
• Genome accession: NZ_CP141263
• Coordinates: 2754315..2756711 (-)
• Length: 798 a.a.
• NCBI ID: WP_003237483.1
• Uniprot ID: -
• Organism: Bacillus inaquosorum strain BIM B-2002
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2749315..2761711

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U6I89_RS13925 (U6I89_13925)	-	2750387..2751115 (+)	729	WP_060399132.1	amino acid ABC transporter ATP-binding protein	-
U6I89_RS13930 (U6I89_13930)	glnH	2751137..2751958 (+)	822	WP_003237479.1	glutamine ABC transporter substrate-binding protein GlnH	-
U6I89_RS13935 (U6I89_13935)	-	2752019..2752669 (+)	651	WP_003237480.1	amino acid ABC transporter permease	-
U6I89_RS13940 (U6I89_13940)	-	2752686..2753342 (+)	657	WP_003237481.1	amino acid ABC transporter permease	-
U6I89_RS13945 (U6I89_13945)	-	2753378..2753509 (-)	132	WP_003225895.1	YrzQ family protein	-
U6I89_RS13950 (U6I89_13950)	-	2753531..2753722 (-)	192	WP_003225893.1	hypothetical protein	-
U6I89_RS13955 (U6I89_13955)	-	2753734..2754258 (-)	525	WP_080429038.1	PRC-barrel domain-containing protein	-
U6I89_RS13960 (U6I89_13960)	recD2	2754315..2756711 (-)	2397	WP_003237483.1	ATP-dependent RecD-like DNA helicase	Machinery gene
U6I89_RS13965 (U6I89_13965)	-	2756736..2757356 (-)	621	WP_232919234.1	tetratricopeptide repeat protein	-
U6I89_RS13970 (U6I89_13970)	mnmA	2757442..2758557 (-)	1116	WP_060399134.1	tRNA 2-thiouridine(34) synthase MnmA	-
U6I89_RS13975 (U6I89_13975)	-	2758585..2759727 (-)	1143	WP_003237487.1	cysteine desulfurase family protein	-
U6I89_RS13980 (U6I89_13980)	cymR	2759746..2760162 (-)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
U6I89_RS13985 (U6I89_13985)	-	2760364..2761629 (+)	1266	WP_060399135.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 798 a.a.
• Molecular weight: 89155.77 Da
• Isoelectric Point: 5.0321

>NTDB_id=916568 U6I89_RS13960 WP_003237483.1 2754315..2756711(-) (recD2) [Bacillus inaquosorum strain BIM B-2002]
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPKLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETEKLIIDTQSLLNQSAREGQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPVVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDEPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPREKRREIKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSLQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide

• Length: 2397 bp

>NTDB_id=916568 U6I89_RS13960 WP_003237483.1 2754315..2756711(-) (recD2) [Bacillus inaquosorum strain BIM B-2002]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAAGGGACAGTCAACACAGTCATCTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCTATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACCCATCCAAAATTCGGGCTC
CAATTTCAGGCGGAGCATTTCAAAAAGGAGATTCCGACGACTAAGGAAGGCATCATTCAATATTTATCGAGTGATTTGTT
CGAGGGAATCGGCAAAAAAACAGCCGAGGAAATTGTGAAAAAGCTGGGCGACAGCGCTATTAATAAAATATTGGCTGACG
CTTCAGTGCTTTATGACGTTCCGAAGCTGTCAAAAAAGAAAGCTGATACGCTGGCCGGCGCCTTGCAGCGTCATCAGGGA
CTGGAGCAAATCATGATTTCCCTGAATCAGTTTGGCTTCGGCCCGCAGCTGTCTATGAAAATCTACCAAGCCTATGAATC
CGAGACGCTTGAAAAGATTCAGGAAAACCCTTATCAGCTTGTGAAAGATGTAGAAGGCATCGGATTTGGGAAAGCGGATG
AGCTGGGCAGCAGAATGGGCCTTTCGGGTAATCACCCTGAGCGGGTAAAAGCCGCCATATTGTACACGCTTGAAACGACT
TGTCTGTCAGAAGGGCATACGTACATAGAAACGGAGAAGCTGATTATTGACACCCAATCTCTGTTAAATCAATCAGCTCG
GGAGGGACAGCGCATCACTGAAATGGATGCCGCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAG
ATGGCCGCTGTTATTTTCCATCGCTGTTTTACGCTGAACAAAATGTTGCTAAGCGAGTGAAACATATCGCAAGCCAAACT
GAATATGATGACCAGTTTCCCGAATCAGAATTTCTGCTCGCTTTAGGAGAACTGGAAGAACGGATGAACGTTCAGTATGC
CCCTAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCTCACCGATGCTTCTTTTAACGGGGGGACCGGGAACAGGGAAAA
CGACGGTAATCAGAGGGATTGTCGAACTGTACGGAGAGCTTCACGGTGTGTCACTCGACCCGTCAGCGTATAAAAAGGAT
GAAGCTTTTCCGGTTGTATTGGCCGCACCGACAGGAAGAGCGGCGAAACGGATGAGTGAATCAACGGGGCTTCCGGCAGT
GACGATTCACAGGCTGCTTGGCTGGAACGGCGCTGAAGGATTTACCCATACAGAGGATGAGCCGATTGAAGGGAAGCTGT
TAATAATCGATGAAGCCAGCATGCTTGATATATGGCTGGCGAACCATTTGTTCAAGGCGATCCCTGATCATATTCAAATC
ATCATTGTCGGTGACGAAGATCAGCTGCCTTCTGTCGGTCCGGGCCAAGTGCTGAGAGACCTTTTGGCATCCCAGGTGAT
ACCGACTGTGAGACTGACAGACATCTACCGCCAGGCGGAGGGTTCATCGATTGTCGAGCTTGCCCACCAAATGAAAAATG
GGTTGCTGCCAAACAATTTGACTGCCCCGACGAAGGACCGTTCCTTTATTCGCTGCGGAGGCTCGCAAATTAAAGAGGTA
GTTGAGAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATTCAGGTTCTCGCCCCGATGTACAGAGG
AAAAGCCGGGATCAATGAACTGAATGTGATGCTACAGGATATTTTGAATCCTCCTAGAGAAAAACGGAGGGAAATAAAGT
TCGGGGATGTTGTCTACAGAACCGGGGATAAAATTTTGCAGCTCGTCAATCAGCCGGAAAACAATGTGTTCAACGGAGAC
ATTGGCGAAATTACATCGATATTTTATGCGAAGGAAAATACAGAAAAAGAAGATATGGCCGTCGTTTCTTTTGACGGCAA
TGAAATGACGTTTACGAAAAAAGATTTTAACCAGTTTACCCATGCGTATTGCTGCTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTATTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCTATTACA
AGAGCAAAGAAATTTCTCATTTTATGCGGAGAAGAGGAAGCGCTGGAGTGGGGCGTGAAAAATAACGACGCAACTGTCAG
ACAGACTTCTTTGAAAAACAGGCTGTCATTACAGGTTGAGGAAATGGATGCTGAGCTTGAAGCTTTGCAAAAGGAGCTCC
CATTCAGCGTACACGATGCCAATATTGGCATGGAAGGCATTACACCATTCGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (594-662)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (681-729)

• AAA domain (AAA_30) (346-553)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	98.745	99.875	0.986