Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   U6I89_RS08910 Genome accession   NZ_CP141263
Coordinates   1800353..1801132 (+) Length   259 a.a.
NCBI ID   WP_003238551.1    Uniprot ID   A0A9W5PD99
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1795353..1806132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS08890 (U6I89_08890) trmFO 1796046..1797353 (+) 1308 WP_060398623.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  U6I89_RS08895 (U6I89_08895) xerC 1797421..1798335 (+) 915 WP_060398624.1 tyrosine recombinase XerC -
  U6I89_RS08900 (U6I89_08900) clpQ 1798348..1798893 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  U6I89_RS08905 (U6I89_08905) hslU 1798910..1800313 (+) 1404 WP_019258392.1 HslU--HslV peptidase ATPase subunit -
  U6I89_RS08910 (U6I89_08910) codY 1800353..1801132 (+) 780 WP_003238551.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  U6I89_RS08915 (U6I89_08915) flgB 1801514..1801903 (+) 390 WP_060398625.1 flagellar basal body rod protein FlgB -
  U6I89_RS08920 (U6I89_08920) flgC 1801903..1802355 (+) 453 WP_003238546.1 flagellar basal body rod protein FlgC -
  U6I89_RS08925 (U6I89_08925) fliE 1802367..1802687 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  U6I89_RS08930 (U6I89_08930) fliF 1802733..1804343 (+) 1611 WP_080429004.1 flagellar basal-body MS-ring/collar protein FliF -
  U6I89_RS08935 (U6I89_08935) fliG 1804356..1805372 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  U6I89_RS08940 (U6I89_08940) fliH 1805365..1806117 (+) 753 WP_060398627.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29036.26 Da        Isoelectric Point: 4.7210

>NTDB_id=916548 U6I89_RS08910 WP_003238551.1 1800353..1801132(+) (codY) [Bacillus inaquosorum strain BIM B-2002]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=916548 U6I89_RS08910 WP_003238551.1 1800353..1801132(+) (codY) [Bacillus inaquosorum strain BIM B-2002]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCAGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AACGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAGAATAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACCCTCATTCTTTCACGTTTACAGGATC
AATTTCATGATGATGATTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGCATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGCCTTCTCGTTGCAAGTAAAATCGCAGACCGCGTCGGCATTACCC
GCTCTGTGATTGTTAATGCACTCAGAAAGCTGGAAAGCGCCGGTGTCATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTTAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467