Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   U2H13_RS08475 Genome accession   NZ_CP141181
Coordinates   1671016..1671795 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. A1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1666016..1676795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2H13_RS08455 (U2H13_08440) trmFO 1666703..1668010 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  U2H13_RS08460 (U2H13_08445) xerC 1668080..1668997 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  U2H13_RS08465 (U2H13_08450) hslV 1669013..1669558 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  U2H13_RS08470 (U2H13_08455) hslU 1669575..1670978 (+) 1404 WP_061862191.1 HslU--HslV peptidase ATPase subunit -
  U2H13_RS08475 (U2H13_08460) codY 1671016..1671795 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  U2H13_RS08480 (U2H13_08465) flgB 1672149..1672538 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  U2H13_RS08485 (U2H13_08470) flgC 1672538..1672990 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  U2H13_RS08490 (U2H13_08475) fliE 1673001..1673321 (+) 321 WP_121984421.1 flagellar hook-basal body complex protein FliE -
  U2H13_RS08495 (U2H13_08480) fliF 1673364..1674974 (+) 1611 WP_376700766.1 flagellar basal-body MS-ring/collar protein FliF -
  U2H13_RS08500 (U2H13_08485) fliG 1674987..1676003 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  U2H13_RS08505 (U2H13_08490) fliH 1675996..1676751 (+) 756 WP_017417778.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=916243 U2H13_RS08475 WP_003154263.1 1671016..1671795(+) (codY) [Bacillus sp. A1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=916243 U2H13_RS08475 WP_003154263.1 1671016..1671795(+) (codY) [Bacillus sp. A1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471