Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCU36_RS00565 Genome accession   NZ_AP025458
Coordinates   125621..126334 (-) Length   237 a.a.
NCBI ID   WP_261838582.1    Uniprot ID   -
Organism   Vibrio artabrorum strain CECT 7226     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 120621..131334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU36_RS00540 - 121853..122341 (+) 489 WP_261838578.1 type II secretion system protein M -
  OCU36_RS00545 - 122343..123122 (+) 780 WP_261838579.1 type II secretion system protein N -
  OCU36_RS00550 cysQ 123225..124052 (-) 828 WP_261838580.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCU36_RS00555 nudE 124089..124640 (-) 552 WP_261838581.1 ADP compounds hydrolase NudE -
  OCU36_RS00560 nfuA 124926..125510 (-) 585 WP_029405734.1 Fe-S biogenesis protein NfuA -
  OCU36_RS00565 comF 125621..126334 (-) 714 WP_261838582.1 ComF family protein Machinery gene
  OCU36_RS00570 bioH 126428..127204 (+) 777 WP_261838583.1 pimeloyl-ACP methyl ester esterase BioH -
  OCU36_RS00575 - 127378..127851 (+) 474 WP_261838584.1 ATP-dependent Lon protease -
  OCU36_RS00580 - 128040..130370 (-) 2331 WP_261838585.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27241.58 Da        Isoelectric Point: 8.7858

>NTDB_id=91588 OCU36_RS00565 WP_261838582.1 125621..126334(-) (comF) [Vibrio artabrorum strain CECT 7226]
MLSDWLQKHTPRLVTPQCHLCKLDKLPSDTHPRWCDCCLRLFEPTPRCQRCGLTTRVTVAQCGECLSKPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWLARDLAKLLASRVEHPAPLITSVPLYWRRYIHRGFNQSQLLANYTAQELGVKDEVLFRRIR
STASQQGLSKSARLHNLNNAFALRKQDVEETIPSHVAIIDDVVTTGSTVYQLCQLLLDVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=91588 OCU36_RS00565 WP_261838582.1 125621..126334(-) (comF) [Vibrio artabrorum strain CECT 7226]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACGCCTCAGTGCCATCTGTGCAAGCTCGATAAACTCCC
CAGCGATACACATCCTCGATGGTGTGATTGTTGCCTTAGGCTATTTGAACCTACCCCACGCTGTCAGCGATGTGGCTTAA
CAACGCGAGTCACTGTCGCTCAATGTGGTGAATGCTTATCAAAACCTCCACCTTGGCATCGTCTCTATTGCGTCGGTGAC
TACACCTTCCCAACGGCACGTTATATCCAACAAATGAAGTACGCCGATAAGTTTTGGTTGGCACGCGATCTGGCAAAATT
ATTAGCATCACGTGTCGAACATCCTGCTCCGCTGATCACCAGTGTACCGTTGTATTGGCGTCGATACATTCATCGTGGCT
TTAATCAGAGTCAGCTGCTAGCGAATTACACCGCTCAAGAGCTTGGCGTTAAAGATGAGGTGCTATTTCGTCGAATTCGT
TCAACCGCTTCTCAACAAGGGCTGTCCAAATCTGCACGATTACACAATCTAAACAACGCCTTTGCACTGCGAAAACAAGA
TGTTGAAGAAACAATCCCCTCTCACGTCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTGCTTGATGTGGGCGTTAAAAGGATTGATATTTACTGTATCTGCCGTACTCCTGAGCCCTCGGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.508

99.578

0.553
  comF Vibrio campbellii strain DS40M4

50.41

100

0.519

Multiple sequence alignment