Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABYA78_RS27430 Genome accession   NZ_CP159883
Coordinates   5743020..5743445 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 100690     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5738020..5748445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABYA78_RS27415 (ABYA78_27415) pilX 5738590..5739177 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  ABYA78_RS27420 (ABYA78_27420) pilY1 5739189..5742674 (+) 3486 WP_033940136.1 type 4a pilus biogenesis protein PilY1 -
  ABYA78_RS27425 (ABYA78_27425) pilY2 5742676..5743023 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  ABYA78_RS27430 (ABYA78_27430) comF 5743020..5743445 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  ABYA78_RS27435 (ABYA78_27435) ispH 5743492..5744436 (-) 945 WP_034040515.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABYA78_RS27440 (ABYA78_27440) fkpB 5744522..5744962 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  ABYA78_RS27445 (ABYA78_27445) lspA 5744955..5745464 (-) 510 WP_003102615.1 signal peptidase II -
  ABYA78_RS27450 (ABYA78_27450) ileS 5745457..5748288 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=915583 ABYA78_RS27430 WP_003094721.1 5743020..5743445(+) (comF) [Pseudomonas aeruginosa strain 100690]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=915583 ABYA78_RS27430 WP_003094721.1 5743020..5743445(+) (comF) [Pseudomonas aeruginosa strain 100690]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAATCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383