Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ABRY27_RS15095 Genome accession   NZ_CP159841
Coordinates   3135293..3135817 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA3117     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3130293..3140817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRY27_RS15075 (ABRY27_15075) - 3130360..3132831 (-) 2472 WP_031756300.1 penicillin-binding protein 1A -
  ABRY27_RS15080 (ABRY27_15080) pilM 3133016..3134080 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ABRY27_RS15085 (ABRY27_15085) pilN 3134080..3134676 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ABRY27_RS15090 (ABRY27_15090) pilO 3134673..3135296 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABRY27_RS15095 (ABRY27_15095) comL/pilP 3135293..3135817 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ABRY27_RS15100 (ABRY27_15100) pilQ 3135871..3138015 (+) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  ABRY27_RS15105 (ABRY27_15105) aroK 3138027..3138545 (+) 519 WP_003095833.1 shikimate kinase AroK -
  ABRY27_RS15110 (ABRY27_15110) aroB 3138595..3139701 (+) 1107 WP_003107839.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=915148 ABRY27_RS15095 WP_003095836.1 3135293..3135817(+) (comL/pilP) [Pseudomonas aeruginosa strain PA3117]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=915148 ABRY27_RS15095 WP_003095836.1 3135293..3135817(+) (comL/pilP) [Pseudomonas aeruginosa strain PA3117]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACTATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362