Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   U6038_RS14480 Genome accession   NZ_CP140715
Coordinates   2991401..2991799 (-) Length   132 a.a.
NCBI ID   WP_201701734.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2986401..2996799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS14450 (U6038_14450) - 2986963..2987928 (+) 966 WP_333653954.1 triacylglycerol lipase -
  U6038_RS14455 (U6038_14455) - 2988108..2989079 (+) 972 WP_224468171.1 esterase/lipase family protein -
  U6038_RS14460 (U6038_14460) rplS 2989138..2989512 (-) 375 WP_004691454.1 50S ribosomal protein L19 -
  U6038_RS14465 (U6038_14465) trmD 2989653..2990393 (-) 741 WP_333653957.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  U6038_RS14470 (U6038_14470) rimM 2990421..2990969 (-) 549 WP_004978035.1 ribosome maturation factor RimM -
  U6038_RS14475 (U6038_14475) rpsP 2990998..2991255 (-) 258 WP_004718284.1 30S ribosomal protein S16 -
  U6038_RS14480 (U6038_14480) comF 2991401..2991799 (-) 399 WP_201701734.1 type IV pilin protein Machinery gene
  U6038_RS14485 (U6038_14485) - 2991799..2992302 (-) 504 WP_333656801.1 pili assembly chaperone -
  U6038_RS14490 (U6038_14490) - 2992465..2996757 (-) 4293 WP_333653959.1 pilus assembly protein PilC -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14611.68 Da        Isoelectric Point: 8.4445

>NTDB_id=915133 U6038_RS14480 WP_201701734.1 2991401..2991799(-) (comF) [Acinetobacter johnsonii strain FAHZZU3110hy]
MKQQQAFTLIELMIVVAIIAVLAAIAYPSYQEYIKRTHRADMQSEMMQQAQQLQSYYVIKHHYTDAALSYVGNERYALAL
TAQSAQTWTMTATPKAAQAGDGVILLNSQGQKCWTKGASTCALSGTSNWDGR

Nucleotide


Download         Length: 399 bp        

>NTDB_id=915133 U6038_RS14480 WP_201701734.1 2991401..2991799(-) (comF) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGAAACAACAACAAGCATTTACCCTCATTGAGCTGATGATAGTGGTGGCCATTATTGCTGTTTTGGCTGCGATTGCTTA
CCCAAGCTATCAAGAATATATCAAACGTACTCACCGCGCCGATATGCAAAGTGAAATGATGCAACAAGCACAGCAGTTAC
AAAGTTATTATGTGATTAAGCATCATTATACGGATGCAGCGTTGAGTTATGTTGGCAATGAGCGTTATGCCCTTGCATTA
ACAGCGCAAAGCGCACAAACGTGGACAATGACTGCTACCCCAAAAGCGGCTCAAGCTGGTGATGGCGTGATTTTACTCAA
TAGCCAAGGGCAAAAATGCTGGACCAAAGGTGCATCGACTTGTGCCCTAAGTGGCACATCCAACTGGGACGGCAGATAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

50.694

100

0.553
  pilE Acinetobacter baumannii D1279779

50

100

0.523