Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   TQH59_RS15055 Genome accession   NZ_CP140708
Coordinates   3012042..3012440 (-) Length   132 a.a.
NCBI ID   WP_201701734.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3007042..3017440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS15020 (TQH59_15020) tnpB 3007299..3007634 (+) 336 WP_219356852.1 IS66 family insertion sequence element accessory protein TnpB -
  TQH59_RS15025 (TQH59_15025) tnpC 3007709..3009313 (+) 1605 WP_201701530.1 IS66 family transposase -
  TQH59_RS15030 (TQH59_15030) - 3009333..3009719 (+) 387 Protein_2906 lipase -
  TQH59_RS15035 (TQH59_15035) rplS 3009779..3010153 (-) 375 WP_004691454.1 50S ribosomal protein L19 -
  TQH59_RS15040 (TQH59_15040) trmD 3010294..3011034 (-) 741 WP_125280918.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  TQH59_RS15045 (TQH59_15045) rimM 3011062..3011610 (-) 549 WP_004978035.1 ribosome maturation factor RimM -
  TQH59_RS15050 (TQH59_15050) rpsP 3011639..3011896 (-) 258 WP_004718284.1 30S ribosomal protein S16 -
  TQH59_RS15055 (TQH59_15055) comF 3012042..3012440 (-) 399 WP_201701734.1 type IV pilin protein Machinery gene
  TQH59_RS15060 (TQH59_15060) - 3012440..3012943 (-) 504 WP_333642433.1 pili assembly chaperone -
  TQH59_RS15065 (TQH59_15065) - 3013106..3017404 (-) 4299 WP_333640588.1 pilus assembly protein PilC -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14611.68 Da        Isoelectric Point: 8.4445

>NTDB_id=915091 TQH59_RS15055 WP_201701734.1 3012042..3012440(-) (comF) [Acinetobacter johnsonii strain FAHZZU3567hy]
MKQQQAFTLIELMIVVAIIAVLAAIAYPSYQEYIKRTHRADMQSEMMQQAQQLQSYYVIKHHYTDAALSYVGNERYALAL
TAQSAQTWTMTATPKAAQAGDGVILLNSQGQKCWTKGASTCALSGTSNWDGR

Nucleotide


Download         Length: 399 bp        

>NTDB_id=915091 TQH59_RS15055 WP_201701734.1 3012042..3012440(-) (comF) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGAAACAACAACAAGCATTTACCCTCATTGAGCTGATGATAGTGGTGGCCATTATTGCTGTTTTGGCTGCGATTGCTTA
CCCAAGCTATCAAGAATATATCAAACGTACTCACCGCGCCGATATGCAAAGTGAAATGATGCAACAAGCACAGCAGTTAC
AAAGTTATTATGTGATTAAGCATCATTATACGGATGCAGCGTTGAGTTATGTTGGCAATGAGCGTTATGCCCTTGCATTA
ACAGCGCAAAGCGCACAAACGTGGACAATGACTGCTACCCCAAAAGCGGCTCAAGCTGGTGATGGCGTGATTTTACTCAA
TAGCCAAGGGCAAAAATGCTGGACCAAAGGTGCATCGACTTGTGCCCTAAGTGGCACATCCAACTGGGACGGCAGATAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

50.694

100

0.553
  pilE Acinetobacter baumannii D1279779

50

100

0.523