Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABRY24_RS16485 Genome accession   NZ_CP159840
Coordinates   2950543..2950968 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PA64     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2945543..2955968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRY24_RS16465 (ABRY24_16465) ileS 2945700..2948531 (+) 2832 WP_023103515.1 isoleucine--tRNA ligase -
  ABRY24_RS16470 (ABRY24_16470) lspA 2948524..2949033 (+) 510 WP_003110420.1 signal peptidase II -
  ABRY24_RS16475 (ABRY24_16475) fkpB 2949026..2949466 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  ABRY24_RS16480 (ABRY24_16480) ispH 2949552..2950496 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABRY24_RS16485 (ABRY24_16485) comF 2950543..2950968 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  ABRY24_RS16490 (ABRY24_16490) pilY2 2950965..2951312 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  ABRY24_RS16495 (ABRY24_16495) pilY1 2951314..2954805 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  ABRY24_RS16500 (ABRY24_16500) pilX 2954817..2955404 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=915036 ABRY24_RS16485 WP_003094721.1 2950543..2950968(-) (comF) [Pseudomonas aeruginosa strain PA64]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=915036 ABRY24_RS16485 WP_003094721.1 2950543..2950968(-) (comF) [Pseudomonas aeruginosa strain PA64]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAATCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383