Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   L6430_RS22145 Genome accession   NZ_AP025342
Coordinates   4376853..4379201 (-) Length   782 a.a.
NCBI ID   WP_025811058.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4371853..4384201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS22125 - 4371896..4373467 (+) 1572 WP_023855389.1 SH3 domain-containing protein -
  L6430_RS22130 dtd 4373495..4373938 (-) 444 WP_212930422.1 D-aminoacyl-tRNA deacylase -
  L6430_RS22135 - 4373952..4376153 (-) 2202 WP_023855390.1 RelA/SpoT family protein -
  L6430_RS22140 - 4376323..4376835 (-) 513 WP_023855391.1 adenine phosphoribosyltransferase -
  L6430_RS22145 recJ 4376853..4379201 (-) 2349 WP_025811058.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  L6430_RS22150 - 4379273..4379566 (-) 294 WP_023855393.1 LapA family protein -
  L6430_RS22155 secDF 4379719..4381944 (-) 2226 WP_026579145.1 protein translocase subunit SecDF -
  L6430_RS22160 - 4381981..4382277 (-) 297 WP_023855396.1 post-transcriptional regulator -
  L6430_RS22165 spoVB 4382395..4383948 (+) 1554 WP_026579144.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 87609.33 Da        Isoelectric Point: 4.9120

>NTDB_id=91500 L6430_RS22145 WP_025811058.1 4376853..4379201(-) (recJ) [Bacillus paralicheniformis strain J41TS8]
MLASKMRWDVQTPDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLNGKDAVFHDPYLLKDMEKAVQRIKQAISDQ
EKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFKEGYGPNEAAFRGIKESGYSLIITVDTGIAAVHEAEVAKEL
GVDLIITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
AKRGMEQFRRTKRPGLKALTKIAGAEIHSADEETIGFQIAPRLNAVGRIEQADPAVYLLNTKDETEAEELAEDINALNKE
RQKIVNQMTEEAVQMIEEEGLDQPVIVAARPGWNPGVVGIVASKLVERYYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEEDFIPVQDVDLCCRLEDITVDSIAEMNMLAPFGTGN
PKPFVLVSDVKIDDSRKIGANKNHLKLVLADGENKLDCIGFYKGAIEDGIVPGAKISIVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDLRGKRSWEEKILQLDPAKRACICFREETKAKLAGTGLEEELTVISGPEDAERLVLESRYAVFIDIPPSLDI
FDQVIKGKKLERIYLIFYQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYHAEKRDLTDSETYREKQRLIELEQKLIYSSADELKQWLDKRMAENAVAYKV

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=91500 L6430_RS22145 WP_025811058.1 4376853..4379201(-) (recJ) [Bacillus paralicheniformis strain J41TS8]
ATGTTAGCGTCAAAAATGCGTTGGGACGTGCAAACGCCCGACAAAGAAAAGGTGGAGCAGCTCGCCGGAAGATTAGGCAT
TACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGTTACGATACAGCCGACAAAGCATCTTCATTTTTAAATGGCAAGG
ATGCAGTTTTTCACGATCCTTATCTGCTGAAAGATATGGAAAAAGCTGTACAGCGAATCAAACAGGCAATTTCAGATCAA
GAAAAGATTATGATTTACGGCGATTATGATGCGGACGGTGTGACAAGCACGACTGTCCTTTTGCAAATGTTGAAAAAATG
TTCAGCACAAGCCGATTTTTATATACCTGACCGCTTTAAAGAAGGGTACGGCCCGAACGAAGCGGCCTTTCGCGGGATCA
AAGAATCAGGCTATTCATTGATCATCACAGTTGACACAGGCATTGCCGCCGTTCATGAAGCTGAAGTCGCTAAAGAGCTT
GGCGTCGATTTGATCATTACGGATCACCATGAGCCGGGACCCGTTTTGCCGGATGCCTATGCGATCATTCATCCGAAGCA
GCCGGGCTGCGGCTATCCATTTAAAGAGCTTGCCGGCGTCGGTGTCGCATTTAAGCTAGCCCACGCTTTGAACGGAGAGC
TCCCGGAAGATTTGCTCGACCTTTGTGCGATCGGCACGATTGCCGACCTTGTGCCGCTTCATGATGAAAACAGGCAGATT
GCCAAGCGCGGCATGGAACAGTTCAGGAGAACGAAGCGCCCCGGATTAAAGGCGCTGACCAAAATTGCCGGAGCGGAGAT
ACATAGTGCGGATGAAGAGACCATCGGTTTTCAAATTGCGCCCCGCTTAAACGCGGTCGGCAGAATTGAACAGGCTGACC
CGGCCGTTTACCTCCTGAACACAAAAGACGAAACAGAAGCGGAAGAGCTGGCCGAAGATATCAACGCCTTGAACAAGGAG
CGCCAAAAAATCGTCAATCAGATGACAGAGGAAGCCGTTCAGATGATCGAGGAGGAAGGCCTTGATCAGCCGGTGATCGT
CGCGGCGCGGCCGGGCTGGAATCCCGGCGTCGTCGGAATCGTGGCTTCAAAGCTTGTCGAGCGGTATTACAGGCCCGCCA
TCGTTCTCGGTATCGATGAAGAAAAAGGCATTGCCAAAGGATCTGCGCGCAGCATCAAAGGATTTGATTTATTTCAAAAT
CTCTCGGAGTGCCGGGATATTCTCCCGCACTTCGGCGGGCACCCGATGGCAGCCGGAATGACGCTCAACCTGGAAGATGT
TTCGGCACTAAGGGAGAGAATCAACCGTCAGGCTGAAGCGGTTCTGACCGAGGAAGATTTTATTCCCGTCCAAGACGTCG
ATTTGTGCTGCCGGCTCGAAGATATCACGGTTGACAGCATTGCCGAAATGAACATGCTGGCGCCGTTCGGCACGGGAAAT
CCGAAGCCCTTCGTCCTTGTCAGCGACGTTAAAATTGATGATTCCAGGAAAATCGGCGCCAACAAGAATCACTTGAAGCT
TGTGCTGGCAGACGGCGAGAACAAGCTTGATTGCATCGGATTTTATAAAGGCGCCATCGAAGACGGGATCGTTCCTGGAG
CAAAGATCTCGATTGTCGGGGAACTGTCGATTAACGAGTGGAATAACAGAAAAAAACCGCAGCTGATGATCAAAGATGCA
GCCGTCAATGAATGGCAGCTGTTTGATCTGCGGGGAAAACGGTCATGGGAAGAAAAAATATTGCAGCTGGATCCTGCGAA
ACGGGCGTGCATCTGCTTCCGTGAGGAAACCAAAGCGAAGCTTGCGGGGACAGGCCTTGAAGAAGAGCTGACCGTCATCA
GCGGTCCTGAAGATGCAGAGCGTCTCGTCCTTGAGAGCCGCTATGCGGTATTTATAGATATTCCGCCGTCGCTCGACATC
TTTGACCAAGTGATAAAAGGCAAAAAACTGGAGCGCATTTATCTGATTTTTTATCAATCAGACGAACATTTTTTCTCAAC
ATTTCCAACTAGGGAATATTTTAAATGGTACTATGCTTTCCTCCTGAAAAGAGGTTCTTTTGACTTGCCGAAATACGGCG
GGGAGCTTGCCAGACATAAAGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTTTATCATGCCGAAAAGCGCGATCTGACAGATTCTGAAACCTACCGGGAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCATTTATTCTTCGGCGGATGAGCTTAAACAGTGGCTGGATAAGCGGATGG
CGGAAAACGCCGTCGCTTATAAAGTATGA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

DHHA1 domain (DHHA1)

(315-436)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

69.014

99.872

0.689

Multiple sequence alignment