Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   L6430_RS22070 Genome accession   NZ_AP025342
Coordinates   4359055..4361451 (-) Length   798 a.a.
NCBI ID   WP_212930432.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4354055..4366451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS22050 - 4356999..4358057 (-) 1059 WP_003183924.1 AI-2E family transporter -
  L6430_RS22055 - 4358148..4358279 (-) 132 WP_003183926.1 YrzQ family protein -
  L6430_RS22060 - 4358295..4358486 (-) 192 WP_003183928.1 hypothetical protein -
  L6430_RS22065 - 4358502..4358966 (-) 465 WP_003183930.1 PRC-barrel domain-containing protein -
  L6430_RS22070 recD2 4359055..4361451 (-) 2397 WP_212930432.1 ATP-dependent RecD-like DNA helicase Machinery gene
  L6430_RS22075 - 4361503..4362153 (-) 651 WP_003183935.1 tetratricopeptide repeat protein -
  L6430_RS22080 mnmA 4362247..4363365 (-) 1119 WP_003183938.1 tRNA 2-thiouridine(34) synthase MnmA -
  L6430_RS22085 - 4363471..4364610 (-) 1140 WP_009327778.1 cysteine desulfurase family protein -
  L6430_RS22090 cymR 4364631..4365047 (-) 417 WP_023855382.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89745.40 Da        Isoelectric Point: 4.9464

>NTDB_id=91499 L6430_RS22070 WP_212930432.1 4359055..4361451(-) (recD2) [Bacillus paralicheniformis strain J41TS8]
MQRHNPDQIEMEEASFVKGMVAAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIETRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLAAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQVLAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEITFAKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=91499 L6430_RS22070 WP_212930432.1 4359055..4361451(-) (recD2) [Bacillus paralicheniformis strain J41TS8]
ATGCAGCGCCATAACCCGGACCAAATTGAAATGGAAGAAGCTTCATTTGTAAAAGGAATGGTTGCGGCTGTCATTTATCA
TAATGAAACAAACCTGTATACCGTATTAAAGGTAAAAGTGGAAGAAACATCGGAGTCTTTTGAAGACAAAACCGTTTCTG
TCACGGGTTACTTTCCTTTGATCCATGAAGACGATATCTACACTTTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTTAAAAAAGAAGTGCCGACAACGAAAGAAGGCGTGATCCAATACTTGGCCAGCGATTT
ATTTGAAGGAATCGGCAAGAAAACGGCCGAGGAAATTGTCAATAAGCTGGGGGAAGGGGCAATCAACAAAATTTTAAGCG
ACGGCGCCGTCCTGTATGATGTCCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTTCAGCAGCATCAG
GGGCTCGAGCAGATTATGATCTCCTTGAGCGAATTCGGCTTCGGCCCCCAGCTGTCCATGAAAATTTATCAGGCGTACGA
AGCGGAAACGCTCGATAAAATCCGCGAAAATCCGTACCAGCTTGTCAAAGATGTTGAAGGAATCGGCTTTATCAAAGCAG
ACGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCAAAGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGGCATACGTACATAGAAACGAGACAGCTCATCATCGAGACGCAAAAGCTGTTAAACCAGTCAGC
AGGCGATGAAAAAGTAACCGAGATGGATGTGGCGGACGCGATCATTTCCTTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTATTATCCGTCCCTTTACTACGCTGAACAAAGCTTTGCCAAAAGGGTGCAGAAAATCGCCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGCCAAAAAGAAGCCATACAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACGGGCGGACCGGGAACCGGGAAAA
CGACCGTCATCAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGGCTTAAGCTTAAATCCGGCTGATTACAAAAAAGAT
GAAACGTTTCCGTTTGTGCTGGCAGCACCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGTCTGCCGGCCGT
TACGATTCACAGGCTTCTCGGCTGGAACGGAGCCGAAGGATTTACGCACGATGAAGACAATCCGATTGAAGGACGGCTGC
TCATTATTGATGAAACGAGCATGCTTGATATATGGCTTGCCAACCAATTATTCAAGGCGATCCCCGATCGGATACAGGTG
ATCATGGTCGGAGATGAAGACCAGCTTCCGTCCGTCGGTCCCGGACAGGTGCTAAGGGATCTGTTGGCATCGAATGTGAT
TCCTTCTGTCAGATTAACCGACATTTACAGACAGGCTGAAGGCTCTTCAATCGTTGAACTGGCGCACGAAATGAAACAGG
GAAAGCTTCCGGAAAACTTGGCCGCCCCGACAAAAGACCGTTCTTTTATTCGCTGCCGCCAGCAGCAGATCAAAGAAGTC
GTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGATATTCGGCCAGGGATATTCAGGTTTTGGCTCCGATGTACAGAGG
AGCGGCCGGCATCAATGAGTTGAACGCCCTTTTGCAGGGCATACTGAATCCGCCGAAGCCGAAAGGCAGGGAAATGAAGT
ACGGAGATGTCGTGTACCGTACCGGAGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAGCATAACGTGTTTAACGGTGAC
ATGGGCGAGATCGTCTCGATTTTTTATGCGAAAGAAAATACGGAAAAAGAAGATATGGCCGTTGTCTCTTTCGACGGGAA
TGAAATCACGTTTGCAAAAAAAGATTTCAACCAGTTTACGCACGCCTATTGCTGTTCGATCCACAAATCGCAAGGCAGCG
AATTTCCGATCGTCATCCTTCCGGTCGTCAAAAGCTATTACCGGATGCTGAGAAGGAACTTGCTTTACACGGCTATTACA
AGAAGCAAAAAATTCCTGATTCTGTGCGGCGAAGAGGAAGCCCTTGAATGGGGCGTGAAAAATAAGGAATCATCAGAAAG
GCAGACATCGCTTAAAAGACGGCTTCAGCAGGCGGCACATGAAGAGGATGAAGAGCTCATGGCGCTTCAAAAAGAGCTGC
CATTCAGCGTCTATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGATTTTATGGAAAAGGAAGCAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(346-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

81.602

100

0.817

Multiple sequence alignment