Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   S0I03_RS08425 Genome accession   NZ_CP140613
Coordinates   1645622..1646401 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain WN-I     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1640622..1651401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S0I03_RS08405 trmFO 1641309..1642616 (+) 1308 WP_014417766.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  S0I03_RS08410 xerC 1642686..1643603 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  S0I03_RS08415 hslV 1643619..1644164 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  S0I03_RS08420 hslU 1644181..1645584 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  S0I03_RS08425 codY 1645622..1646401 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  S0I03_RS08430 flgB 1646755..1647144 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  S0I03_RS08435 flgC 1647144..1647596 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  S0I03_RS08440 fliE 1647607..1647927 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  S0I03_RS08445 fliF 1647970..1649580 (+) 1611 WP_014417768.1 flagellar basal-body MS-ring/collar protein FliF -
  S0I03_RS08450 fliG 1649593..1650609 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  S0I03_RS08455 fliH 1650602..1651357 (+) 756 WP_014417769.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=914833 S0I03_RS08425 WP_003154263.1 1645622..1646401(+) (codY) [Bacillus velezensis strain WN-I]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=914833 S0I03_RS08425 WP_003154263.1 1645622..1646401(+) (codY) [Bacillus velezensis strain WN-I]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471