Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   L6430_RS16015 Genome accession   NZ_AP025342
Coordinates   3154586..3155365 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain J41TS8     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3149586..3160365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS15995 trmFO 3150283..3151587 (+) 1305 WP_065644126.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  L6430_RS16000 xerC 3151654..3152568 (+) 915 WP_065644127.1 tyrosine recombinase XerC -
  L6430_RS16005 hslV 3152582..3153127 (+) 546 WP_020451384.1 ATP-dependent protease subunit HslV -
  L6430_RS16010 hslU 3153144..3154547 (+) 1404 WP_025811384.1 HslU--HslV peptidase ATPase subunit -
  L6430_RS16015 codY 3154586..3155365 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  L6430_RS16020 flgB 3155717..3156106 (+) 390 WP_020451387.1 flagellar basal body rod protein FlgB -
  L6430_RS16025 flgC 3156106..3156558 (+) 453 WP_025811385.1 flagellar basal body rod protein FlgC -
  L6430_RS16030 fliE 3156572..3156889 (+) 318 WP_020451389.1 flagellar hook-basal body complex protein FliE -
  L6430_RS16035 fliF 3156940..3158541 (+) 1602 WP_020451390.1 flagellar basal-body MS-ring/collar protein FliF -
  L6430_RS16040 fliG 3158555..3159571 (+) 1017 WP_020451391.1 flagellar motor switch protein FliG -
  L6430_RS16045 fliH 3159555..3160322 (+) 768 WP_020451392.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=91482 L6430_RS16015 WP_003181756.1 3154586..3155365(+) (codY) [Bacillus paralicheniformis strain J41TS8]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=91482 L6430_RS16015 WP_003181756.1 3154586..3155365(+) (codY) [Bacillus paralicheniformis strain J41TS8]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTTGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGCCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGGGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCTGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGTGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment