Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SC851_RS00045 Genome accession   NZ_CP140606
Coordinates   10299..10853 (+) Length   184 a.a.
NCBI ID   WP_004049699.1    Uniprot ID   -
Organism   Ligilactobacillus murinus strain XYW20210915003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5299..15853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC851_RS00030 (SC851_00030) gyrA 6437..8899 (+) 2463 WP_004049705.1 DNA gyrase subunit A -
  SC851_RS00035 (SC851_00035) - 8996..9631 (-) 636 WP_405257670.1 NAD(P)-dependent oxidoreductase -
  SC851_RS00040 (SC851_00040) rpsF 9972..10262 (+) 291 WP_004049701.1 30S ribosomal protein S6 -
  SC851_RS00045 (SC851_00045) ssb 10299..10853 (+) 555 WP_004049699.1 single-stranded DNA-binding protein Machinery gene
  SC851_RS00050 (SC851_00050) rpsR 10875..11111 (+) 237 WP_003695889.1 30S ribosomal protein S18 -
  SC851_RS00055 (SC851_00055) - 11694..12224 (-) 531 WP_004049697.1 hypothetical protein -
  SC851_RS00060 (SC851_00060) - 12385..12591 (+) 207 WP_004049696.1 hypothetical protein -
  SC851_RS00065 (SC851_00065) - 12927..13247 (+) 321 Protein_12 cysteine peptidase family C39 domain-containing protein -
  SC851_RS00070 (SC851_00070) - 13432..14007 (+) 576 WP_225435539.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  SC851_RS00075 (SC851_00075) - 14282..15454 (+) 1173 WP_004047661.1 IS256 family transposase -
  SC851_RS00080 (SC851_00080) - 15596..15727 (+) 132 WP_004049692.1 ComC/BlpC family leader-containing pheromone/bacteriocin -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20060.78 Da        Isoelectric Point: 4.6382

>NTDB_id=914752 SC851_RS00045 WP_004049699.1 10299..10853(+) (ssb) [Ligilactobacillus murinus strain XYW20210915003]
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGSSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGSGFDSTPN
NSNNAADPFAGGQQIDISDDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=914752 SC851_RS00045 WP_004049699.1 10299..10853(+) (ssb) [Ligilactobacillus murinus strain XYW20210915003]
TTGATCAATTCAGTTGTTCTAGTAGGTCGCTTGACCCGAGATCCTGAACTGCGCTACACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGTGTAATGT
GGCGTAAAGCAGCCGAAAACTTTGCTAATTTTACCCACAAAGGTTCCTTAGTAGGGATCGAAGGCCGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAGCAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACAAATGATGCTTTTGGTGGTAGTGGTTTTGATTCCACTCCAAAC
AATAGTAACAATGCGGCTGATCCATTTGCCGGTGGGCAACAGATCGATATCTCAGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.622

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.15

100

0.571