Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   SPH25_RS00090 Genome accession   NZ_CP140484
Coordinates   13814..14095 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain 52N     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8814..19095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPH25_RS00070 groES 9393..9749 (-) 357 WP_000671953.1 co-chaperone GroES -
  SPH25_RS00075 dnaG 10024..11703 (+) 1680 WP_322536473.1 DNA primase -
  SPH25_RS00080 - 11700..12752 (+) 1053 WP_000721154.1 MnmA/TRMU family protein -
  SPH25_RS00085 - 12842..13669 (+) 828 WP_001154915.1 DUF5718 family protein -
  SPH25_RS00090 comB2 13814..14095 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  SPH25_RS00095 comB3 14095..14358 (+) 264 WP_000584979.1 hypothetical protein Machinery gene
  SPH25_RS00100 comB4 14361..16724 (+) 2364 WP_000890535.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  SPH25_RS00110 - 17046..18386 (+) 1341 WP_042348982.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=914454 SPH25_RS00090 WP_001272686.1 13814..14095(+) (comB2) [Helicobacter pylori strain 52N]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=914454 SPH25_RS00090 WP_001272686.1 13814..14095(+) (comB2) [Helicobacter pylori strain 52N]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989