Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   L6450_RS09045 Genome accession   NZ_AP025340
Coordinates   1804428..1805462 (-) Length   344 a.a.
NCBI ID   WP_041817253.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J36TS2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1799428..1810462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6450_RS08995 tasA 1799498..1800292 (-) 795 WP_020452167.1 biofilm matrix protein TasA -
  L6450_RS09000 sipW 1800365..1800949 (-) 585 WP_020452168.1 signal peptidase I SipW -
  L6450_RS09005 tapA 1800946..1801674 (-) 729 WP_020452169.1 amyloid fiber anchoring/assembly protein TapA -
  L6450_RS09010 - 1801952..1802272 (+) 321 WP_020452170.1 YqzG/YhdC family protein -
  L6450_RS09015 - 1802302..1802484 (-) 183 WP_020452171.1 YqzE family protein -
  L6450_RS09020 comGG 1802573..1802938 (-) 366 WP_020452172.1 competence type IV pilus minor pilin ComGG -
  L6450_RS09025 comGF 1802950..1803432 (-) 483 WP_228119627.1 competence type IV pilus minor pilin ComGF -
  L6450_RS09030 comGE 1803347..1803694 (-) 348 WP_020452174.1 competence type IV pilus minor pilin ComGE -
  L6450_RS09035 comGD 1803678..1804115 (-) 438 WP_020452175.1 competence type IV pilus minor pilin ComGD -
  L6450_RS09040 comGC 1804121..1804414 (-) 294 WP_020452176.1 competence type IV pilus major pilin ComGC Machinery gene
  L6450_RS09045 comGB 1804428..1805462 (-) 1035 WP_041817253.1 competence type IV pilus assembly protein ComGB Machinery gene
  L6450_RS09050 comGA 1805452..1806516 (-) 1065 WP_020452178.1 competence type IV pilus ATPase ComGA Machinery gene
  L6450_RS09055 - 1806674..1807513 (-) 840 WP_020452179.1 STAS domain-containing protein -
  L6450_RS09065 - 1807755..1808132 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  L6450_RS09070 - 1808343..1808588 (+) 246 WP_020452180.1 DUF2626 domain-containing protein -
  L6450_RS09075 - 1808624..1809262 (-) 639 WP_020452181.1 MBL fold metallo-hydrolase -
  L6450_RS09080 - 1809418..1809591 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  L6450_RS09085 - 1809652..1809966 (-) 315 WP_020452182.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39780.12 Da        Isoelectric Point: 9.7341

>NTDB_id=91390 L6450_RS09045 WP_041817253.1 1804428..1805462(-) (comGB) [Bacillus paralicheniformis strain J36TS2]
MKIKKKWPVREQADILKKLGDMMKSGYTILDALSMLKLQLNERRRADLTFAMEKLTEGRPVFQVLEMISFHKDAVTIVYF
AEQHGNLPYAFRQSGELLHRKIAQTEKLKKAARYPLFLVLTVCVIISIMKSAIIPQFSAIYESMNVETSFATTLIFSVFD
HFYLFIAGMMLIAAALSLYYLCSFRHKPPEDKMTFLIRIPLLGQTFKLFNSYFLSLQLSNLLQAGLSVYDSLKAFESQPF
LSFHKNEAKRLIERLKQGESLEQMLAGHPFYENDLAKAVAHGQLNGLLYRELYSYSQFLIERLERKAEKWTGLIQPLIYG
LTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=91390 L6450_RS09045 WP_041817253.1 1804428..1805462(-) (comGB) [Bacillus paralicheniformis strain J36TS2]
ATGAAGATTAAAAAGAAGTGGCCCGTCCGGGAACAGGCGGACATTCTGAAAAAACTCGGAGACATGATGAAGAGCGGATA
TACGATTTTGGATGCTTTAAGTATGCTGAAACTGCAATTGAATGAAAGGCGAAGAGCAGATCTGACATTTGCGATGGAGA
AGCTGACAGAAGGGCGACCTGTGTTTCAAGTGCTTGAAATGATTTCATTTCATAAGGATGCTGTTACCATTGTTTACTTT
GCCGAACAGCACGGGAATTTGCCATATGCCTTTCGGCAGAGCGGAGAGCTGCTTCACCGCAAGATCGCTCAAACCGAAAA
ACTAAAGAAAGCCGCCAGATATCCCTTGTTTTTAGTTTTAACGGTCTGCGTCATTATCTCTATTATGAAATCGGCAATCA
TCCCGCAATTTTCCGCGATCTATGAATCAATGAACGTTGAAACGTCTTTTGCAACGACCCTCATCTTTTCGGTTTTTGAT
CATTTTTATCTTTTTATCGCAGGAATGATGTTGATTGCCGCCGCTTTATCCCTCTATTATCTGTGTTCATTTCGCCATAA
ACCTCCAGAAGACAAAATGACCTTTCTCATTAGAATTCCCTTGCTGGGCCAAACCTTCAAACTATTCAACAGTTATTTTT
TATCGCTCCAATTGAGCAATCTTTTGCAAGCTGGTCTGTCTGTATATGACAGTTTAAAAGCATTTGAAAGCCAGCCGTTT
TTATCATTTCATAAAAATGAAGCGAAGCGTCTGATCGAGCGGCTGAAACAAGGGGAGAGTCTGGAGCAGATGCTGGCCGG
GCATCCGTTTTATGAAAATGATCTGGCGAAGGCTGTTGCTCACGGCCAATTAAACGGACTCTTATACAGAGAGCTGTATT
CATACAGTCAATTTTTGATTGAACGGCTTGAACGGAAAGCAGAAAAATGGACAGGTTTGATCCAGCCATTGATTTACGGG
CTAACAGCGGCGATGATATTAATTCTTTATTTGTCTATGCTTTTGCCAATGTATCAAATGATGAACCAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(216-336)

Type II secretion system (T2SS), protein F (T2SSF)

(16-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

57.276

93.895

0.538

Multiple sequence alignment