Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ABXJ31_RS18215 Genome accession   NZ_CP159644
Coordinates   3744450..3745214 (-) Length   254 a.a.
NCBI ID   WP_097402991.1    Uniprot ID   -
Organism   Escherichia coli strain Z226-5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3739450..3750214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ31_RS18205 (ABXJ31_18205) nikR 3743240..3743641 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  ABXJ31_RS18210 (ABXJ31_18210) nikE 3743647..3744453 (-) 807 WP_000173631.1 nickel import ATP-binding protein NikE -
  ABXJ31_RS18215 (ABXJ31_18215) amiE 3744450..3745214 (-) 765 WP_097402991.1 nickel import ATP-binding protein NikD Regulator
  ABXJ31_RS18220 (ABXJ31_18220) nikC 3745214..3746047 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  ABXJ31_RS18225 (ABXJ31_18225) nikB 3746044..3746988 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  ABXJ31_RS18230 (ABXJ31_18230) nikA 3746988..3748562 (-) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  ABXJ31_RS18235 (ABXJ31_18235) acpT 3748673..3749260 (-) 588 WP_000285774.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26852.44 Da        Isoelectric Point: 6.3761

>NTDB_id=913843 ABXJ31_RS18215 WP_097402991.1 3744450..3745214(-) (amiE) [Escherichia coli strain Z226-5]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDMAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=913843 ABXJ31_RS18215 WP_097402991.1 3744450..3745214(-) (amiE) [Escherichia coli strain Z226-5]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACATGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.2

98.425

0.406
  amiE Streptococcus thermophilus LMD-9

41.2

98.425

0.406
  amiE Streptococcus salivarius strain HSISS4

40

98.425

0.394