Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   L6450_RS04765 Genome accession   NZ_AP025340
Coordinates   917079..917858 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain J36TS2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 912079..922858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6450_RS04745 trmFO 912776..914080 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  L6450_RS04750 xerC 914147..915061 (+) 915 WP_020451383.1 tyrosine recombinase XerC -
  L6450_RS04755 hslV 915075..915620 (+) 546 WP_020451384.1 ATP-dependent protease subunit HslV -
  L6450_RS04760 hslU 915637..917040 (+) 1404 WP_020451385.1 HslU--HslV peptidase ATPase subunit -
  L6450_RS04765 codY 917079..917858 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  L6450_RS04770 flgB 918210..918599 (+) 390 WP_020451387.1 flagellar basal body rod protein FlgB -
  L6450_RS04775 flgC 918599..919051 (+) 453 WP_020451388.1 flagellar basal body rod protein FlgC -
  L6450_RS04780 fliE 919065..919382 (+) 318 WP_020451389.1 flagellar hook-basal body complex protein FliE -
  L6450_RS04785 fliF 919433..921034 (+) 1602 WP_020451390.1 flagellar basal-body MS-ring/collar protein FliF -
  L6450_RS04790 fliG 921048..922064 (+) 1017 WP_020451391.1 flagellar motor switch protein FliG -
  L6450_RS04795 fliH 922048..922815 (+) 768 WP_020451392.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=91379 L6450_RS04765 WP_003181756.1 917079..917858(+) (codY) [Bacillus paralicheniformis strain J36TS2]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=91379 L6450_RS04765 WP_003181756.1 917079..917858(+) (codY) [Bacillus paralicheniformis strain J36TS2]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment