Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   U3P88_RS01655 Genome accession   NZ_CP140297
Coordinates   372074..372853 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UMAF6639     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 367074..377853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS01635 (U3P88_01635) trmFO 367762..369069 (+) 1308 WP_029973471.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  U3P88_RS01640 (U3P88_01640) xerC 369139..370056 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  U3P88_RS01645 (U3P88_01645) hslV 370072..370617 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  U3P88_RS01650 (U3P88_01650) hslU 370634..372036 (+) 1403 Protein_329 HslU--HslV peptidase ATPase subunit -
  U3P88_RS01655 (U3P88_01655) codY 372074..372853 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  U3P88_RS01660 (U3P88_01660) flgB 373207..373596 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  U3P88_RS01665 (U3P88_01665) flgC 373596..374048 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  U3P88_RS01670 (U3P88_01670) fliE 374059..374379 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  U3P88_RS01675 (U3P88_01675) fliF 374422..376032 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  U3P88_RS01680 (U3P88_01680) fliG 376045..377061 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  U3P88_RS01685 (U3P88_01685) fliH 377054..377809 (+) 756 WP_061861457.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=913511 U3P88_RS01655 WP_003154263.1 372074..372853(+) (codY) [Bacillus velezensis strain UMAF6639]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=913511 U3P88_RS01655 WP_003154263.1 372074..372853(+) (codY) [Bacillus velezensis strain UMAF6639]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTTAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471