Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   U0M98_RS11790 Genome accession   NZ_CP140267
Coordinates   2070369..2072726 (-) Length   785 a.a.
NCBI ID   WP_013059293.1    Uniprot ID   A0A1Q8V101
Organism   Priestia megaterium strain CACC119     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2065369..2077726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0M98_RS11770 alaS 2065678..2068311 (-) 2634 WP_097824621.1 alanine--tRNA ligase -
  U0M98_RS11775 - 2068700..2069761 (-) 1062 WP_013059290.1 AI-2E family transporter -
  U0M98_RS11780 - 2069876..2070010 (-) 135 WP_013059291.1 YrzQ family protein -
  U0M98_RS11785 - 2070036..2070227 (-) 192 WP_013059292.1 hypothetical protein -
  U0M98_RS11790 recD2 2070369..2072726 (-) 2358 WP_013059293.1 ATP-dependent RecD-like DNA helicase Machinery gene
  U0M98_RS11795 - 2072751..2073410 (-) 660 WP_013085089.1 lipopolysaccharide assembly protein LapB -
  U0M98_RS11800 mnmA 2073568..2074680 (-) 1113 WP_043976151.1 tRNA 2-thiouridine(34) synthase MnmA -
  U0M98_RS11805 - 2074787..2075929 (-) 1143 WP_165575794.1 cysteine desulfurase family protein -
  U0M98_RS11810 cymR 2075953..2076369 (-) 417 WP_013059297.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88832.25 Da        Isoelectric Point: 5.0673

>NTDB_id=913369 U0M98_RS11790 WP_013059293.1 2070369..2072726(-) (recD2) [Priestia megaterium strain CACC119]
MNEEQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=913369 U0M98_RS11790 WP_013059293.1 2070369..2072726(-) (recD2) [Priestia megaterium strain CACC119]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCGATTGTAACGGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTTA
CAGGCTATTTTCCTAAGCTGAATGAAGATGAAGTATACACGTTTTACGGAGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTGTCTAGCGATTTATT
TCACGGAATCGGTAAAAAAACTGCTGAAAACATTGTGGACGCTCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTTGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGCTTTAGCAGGGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCAGGTATTTTATATGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAACTGTATGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGGCA
TGAGAACCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATTATGGCTCAAACACAGTAC
GAAGAGCAGTTTCCAGAATCAGAATTCTTATTGGCACTGGGTGAACTAGAAGAGCGATTAGACGTGCAATATGCACCTTC
TCAGCGCAAGGGCATACAAACCGCTTTAATGTCTCCGATGCTTCTCTTAACAGGTGGACCAGGTACAGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGATTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCACCTACTGGACGCGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCAGTTACCAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAAAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGGCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGGCTGACAGATGTATACCGGCAAGCGGAAGGATCGTCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCAAGGCAGCAAGGAGATCGTTCTTTTATCCGTTGTCAAGGACAGCACATCACGAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTTTAGCTCCTATGTATAAAGGTCCTGC
AGGTATTGATAAGCTGAATGAAGTTCTTCAGGAATTATTCAACCCGGCTTCTGAACAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCGGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAGGGAAGTGAATTTC
CAATTGTTGTGCTTCCAATTGTTAAAAGCTATTACCGGATGCTGCGACGTAATTTACTTTATACCGCCGTTACGCGAAGC
AAACAGTTTTTAATTTTATGCGGAGAAGACGAAGCGTTTCAGCTGGGAGTTAGCCGAAATGAAGACAGCGTTCGCCAAAC
GAATTTACAGCCGTTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q8V101

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.939

99.618

0.637