Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AABK05_RS02015 Genome accession   NZ_AP027877
Coordinates   437111..437578 (-) Length   155 a.a.
NCBI ID   WP_338388035.1    Uniprot ID   -
Organism   Escherichia coli strain 2018-05-2CC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432111..442578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK05_RS01990 (VEE46_03920) rpsG 432252..432722 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  AABK05_RS01995 (VEE46_03930) fusA 432819..434933 (+) 2115 WP_000124700.1 elongation factor G -
  AABK05_RS02000 (VEE46_03940) tuf 435004..436188 (+) 1185 WP_103488328.1 elongation factor Tu -
  AABK05_RS02005 (VEE46_03950) bfd 436371..436565 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  AABK05_RS02010 (VEE46_03960) bfr 436638..437114 (+) 477 WP_000675526.1 bacterioferritin -
  AABK05_RS02015 (VEE46_03970) pilD 437111..437578 (-) 468 WP_338388035.1 A24 family peptidase Machinery gene
  AABK05_RS02020 (VEE46_03980) rpsJ 437957..438268 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  AABK05_RS02025 (VEE46_03990) rplC 438301..438930 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  AABK05_RS02030 (VEE46_04000) rplD 438941..439546 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  AABK05_RS02035 (VEE46_04010) rplW 439543..439845 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  AABK05_RS02040 (VEE46_04020) rplB 439863..440684 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  AABK05_RS02045 (VEE46_04030) rpsS 440701..440979 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  AABK05_RS02050 (VEE46_04040) rplV 440994..441326 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  AABK05_RS02055 (VEE46_04050) rpsC 441344..442045 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  AABK05_RS02060 (VEE46_04060) rplP 442058..442468 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17115.29 Da        Isoelectric Point: 8.1343

>NTDB_id=91329 AABK05_RS02015 WP_338388035.1 437111..437578(-) (pilD) [Escherichia coli strain 2018-05-2CC]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLASLGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=91329 AABK05_RS02015 WP_338388035.1 437111..437578(-) (pilD) [Escherichia coli strain 2018-05-2CC]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCTCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

42.754

89.032

0.381

Multiple sequence alignment