Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SR852_RS15710 Genome accession   NZ_CP140161
Coordinates   3047821..3048600 (-) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain ATCC 14580     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3042821..3053600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS15680 (SR852_15680) fliH 3042862..3043629 (-) 768 WP_011201651.1 flagellar assembly protein FliH -
  SR852_RS15685 (SR852_15685) fliG 3043613..3044629 (-) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  SR852_RS15690 (SR852_15690) fliF 3044643..3046244 (-) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  SR852_RS15695 (SR852_15695) fliE 3046295..3046612 (-) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  SR852_RS15700 (SR852_15700) flgC 3046626..3047078 (-) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  SR852_RS15705 (SR852_15705) flgB 3047078..3047467 (-) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  SR852_RS15710 (SR852_15710) codY 3047821..3048600 (-) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SR852_RS15715 (SR852_15715) hslU 3048639..3050042 (-) 1404 WP_011197975.1 HslU--HslV peptidase ATPase subunit -
  SR852_RS15720 (SR852_15720) hslV 3050059..3050604 (-) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  SR852_RS15725 (SR852_15725) xerC 3050618..3051532 (-) 915 WP_011197974.1 tyrosine recombinase XerC -
  SR852_RS15730 (SR852_15730) trmFO 3051599..3052903 (-) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=913242 SR852_RS15710 WP_003181756.1 3047821..3048600(-) (codY) [Bacillus licheniformis strain ATCC 14580]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=913242 SR852_RS15710 WP_003181756.1 3047821..3048600(-) (codY) [Bacillus licheniformis strain ATCC 14580]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467