Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   L6432_RS08925 Genome accession   NZ_AP025339
Coordinates   1789096..1791444 (-) Length   782 a.a.
NCBI ID   WP_020452412.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J25TS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1784096..1796444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS08905 - 1784139..1785710 (+) 1572 WP_020452408.1 SH3 domain-containing protein -
  L6432_RS08910 dtd 1785738..1786181 (-) 444 WP_020452409.1 D-aminoacyl-tRNA deacylase -
  L6432_RS08915 - 1786195..1788396 (-) 2202 WP_020452410.1 RelA/SpoT family protein -
  L6432_RS08920 - 1788566..1789078 (-) 513 WP_020452411.1 adenine phosphoribosyltransferase -
  L6432_RS08925 recJ 1789096..1791444 (-) 2349 WP_020452412.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  L6432_RS08930 - 1791516..1791809 (-) 294 WP_020452413.1 LapA family protein -
  L6432_RS08935 secDF 1791963..1794188 (-) 2226 WP_020452414.1 protein translocase subunit SecDF -
  L6432_RS08940 - 1794226..1794522 (-) 297 WP_020452415.1 post-transcriptional regulator -
  L6432_RS08945 spoVB 1794640..1796193 (+) 1554 WP_041817270.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 87610.23 Da        Isoelectric Point: 4.8548

>NTDB_id=91322 L6432_RS08925 WP_020452412.1 1789096..1791444(-) (recJ) [Bacillus paralicheniformis strain J25TS1]
MLASKMRWDVQTPDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLNGKDAVFHDPYLLKDMEKAVQRIKQAISDQ
EKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFKEGYGPNEAAFRGIKESGYSLIITVDTGIAAVHEAEVAKEL
GVDLIITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
AKRGMEQFRRTKRPGLKALTKIAGAEIHSADEETIGFQIAPRLNAVGRIEQADPAVYLLNTEDETEAEELAEDINALNKE
RQKIVNQMTEEAVQMIEEEGLDQPVIVAARPGWNPGVVGIVASKLVERYYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEEDFIPVQDVDLCCRLEDITVDSIAEMNMLAPFGTGN
PKPFVLVSDVKIDDSRKIGANKNHLKLVLADGENKLDCIGFYKGAIEDGIVPGAKISIVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDLRGKRSWEEKILQLDPAKRACICFREETKAKLAGTGLEEELTVISGPEEAERLDLESRYAVFIDIPPSLDI
FDQVIKGKKLERIYLIFYQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYHAERRDLTDSETYREKQRLIELEQKLIYSSAGELKQWLDKRMAENAVAYKV

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=91322 L6432_RS08925 WP_020452412.1 1789096..1791444(-) (recJ) [Bacillus paralicheniformis strain J25TS1]
ATGTTAGCGTCAAAAATGCGTTGGGACGTGCAAACGCCCGACAAAGAAAAGGTGGAGCAGCTCGCCGGAAGATTAGGCAT
TACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGTTACGATACAGCCGACAAAGCATCTTCATTTTTAAATGGCAAGG
ATGCTGTTTTTCACGATCCTTATCTGCTGAAAGATATGGAAAAAGCTGTACAGAGAATCAAACAGGCAATTTCAGATCAA
GAAAAGATTATGATTTACGGCGATTATGATGCGGACGGTGTGACAAGCACGACTGTCCTTTTGCAAATGTTGAAAAAATG
TTCAGCACAAGCCGATTTTTATATACCTGACCGCTTTAAAGAAGGGTACGGCCCGAATGAAGCGGCCTTTCGCGGGATCA
AAGAATCAGGCTATTCATTGATCATCACAGTTGACACAGGCATTGCCGCCGTTCATGAAGCTGAAGTCGCTAAAGAGCTT
GGCGTCGATTTGATCATTACGGATCACCATGAGCCGGGCCCCGTTTTGCCGGATGCCTATGCGATCATTCATCCGAAGCA
GCCGGGCTGCGGCTATCCATTTAAAGAGCTAGCCGGCGTCGGTGTCGCATTTAAGCTAGCCCACGCTTTGAACGGAGAGC
TCCCGGAAGATTTGCTCGACCTTTGTGCGATCGGCACGATTGCCGACCTTGTGCCGCTCCATGATGAAAACAGGCAGATT
GCCAAGCGCGGCATGGAACAGTTCAGGAGGACGAAGCGCCCCGGATTAAAGGCGCTGACCAAAATTGCCGGAGCGGAGAT
ACATAGTGCGGATGAAGAGACCATCGGTTTTCAAATCGCGCCCCGCTTAAACGCGGTCGGCAGAATTGAACAGGCTGACC
CGGCCGTCTACCTCCTGAACACAGAAGACGAAACAGAAGCAGAAGAGCTGGCCGAAGACATCAACGCCTTGAACAAGGAG
CGCCAAAAAATCGTCAATCAGATGACAGAGGAAGCCGTTCAGATGATCGAGGAGGAAGGCCTTGACCAGCCGGTGATCGT
CGCGGCGCGGCCGGGCTGGAATCCCGGCGTCGTCGGAATCGTGGCTTCAAAGCTTGTCGAGAGGTATTACAGGCCAGCCA
TCGTTCTCGGTATCGATGAAGAAAAAGGCATTGCCAAAGGATCTGCGCGCAGCATCAAAGGATTTGATTTATTTCAAAAT
CTCTCGGAGTGCCGGGATATTCTCCCGCACTTCGGCGGGCACCCGATGGCAGCCGGAATGACGCTCAACCTGGAAGATGT
TTCGGCACTAAGGGAGAGAATCAACCGTCAGGCTGAAGCGGTTCTGACCGAGGAAGATTTTATTCCCGTCCAAGACGTCG
ATTTGTGCTGCCGGCTCGAAGATATCACGGTTGACAGCATTGCCGAAATGAACATGCTGGCGCCGTTCGGCACGGGAAAT
CCGAAGCCGTTCGTTCTTGTCAGCGACGTTAAAATTGATGATTCCAGGAAAATCGGCGCCAACAAGAATCACTTGAAGCT
TGTCCTGGCAGACGGCGAGAACAAGCTCGATTGCATCGGATTTTATAAAGGCGCCATCGAAGACGGGATCGTTCCTGGAG
CAAAGATTTCGATTGTCGGGGAACTGTCGATTAACGAGTGGAACAACAGAAAAAAACCGCAGCTGATGATCAAAGATGCG
GCCGTCAATGAATGGCAGCTGTTTGATCTGCGGGGAAAACGGTCATGGGAAGAAAAAATATTGCAGCTGGACCCTGCAAA
ACGGGCGTGCATCTGCTTCCGCGAGGAAACAAAAGCGAAGCTTGCGGGGACAGGCCTTGAAGAAGAGCTGACCGTCATCA
GCGGCCCTGAAGAGGCAGAGCGTCTCGACCTTGAGAGCCGCTATGCGGTATTTATAGATATTCCGCCGTCGCTCGACATC
TTTGACCAAGTGATAAAAGGCAAAAAACTGGAGCGCATTTATCTGATTTTTTATCAATCAGATGAACATTTTTTCTCAAC
ATTTCCAACAAGGGAATACTTTAAATGGTACTATGCTTTCCTCCTGAAAAGAGGTTCTTTTGACTTGCCGAAATACGGCG
GGGAGCTTGCCAGACATAAAGGCTGGACAAAAGACACAATTGATTTCATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTTTATCATGCCGAAAGGCGCGATCTGACAGATTCTGAAACCTACCGGGAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCATTTATTCTTCGGCGGGTGAGCTTAAACAGTGGCTGGATAAGCGGATGG
CGGAAAACGCCGTCGCTTATAAAGTATGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-436)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

69.142

99.872

0.691

Multiple sequence alignment