Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   L6432_RS03305 Genome accession   NZ_AP025339
Coordinates   644590..645369 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain J25TS1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 639590..650369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS03285 trmFO 640287..641591 (+) 1305 WP_025811382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  L6432_RS03290 xerC 641658..642572 (+) 915 WP_025811383.1 tyrosine recombinase XerC -
  L6432_RS03295 hslV 642586..643131 (+) 546 WP_020451384.1 ATP-dependent protease subunit HslV -
  L6432_RS03300 hslU 643148..644551 (+) 1404 WP_025811384.1 HslU--HslV peptidase ATPase subunit -
  L6432_RS03305 codY 644590..645369 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  L6432_RS03310 flgB 645721..646110 (+) 390 WP_020451387.1 flagellar basal body rod protein FlgB -
  L6432_RS03315 flgC 646110..646562 (+) 453 WP_025811385.1 flagellar basal body rod protein FlgC -
  L6432_RS03320 fliE 646576..646893 (+) 318 WP_020451389.1 flagellar hook-basal body complex protein FliE -
  L6432_RS03325 fliF 646944..648545 (+) 1602 WP_020451390.1 flagellar basal-body MS-ring/collar protein FliF -
  L6432_RS03330 fliG 648559..649575 (+) 1017 WP_020451391.1 flagellar motor switch protein FliG -
  L6432_RS03335 fliH 649559..650326 (+) 768 WP_020451392.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=91305 L6432_RS03305 WP_003181756.1 644590..645369(+) (codY) [Bacillus paralicheniformis strain J25TS1]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=91305 L6432_RS03305 WP_003181756.1 644590..645369(+) (codY) [Bacillus paralicheniformis strain J25TS1]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTTGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGCCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGGGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCTGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGTGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment