Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   SR921_RS08055 Genome accession   NZ_CP140150
Coordinates   1654479..1656764 (+) Length   761 a.a.
NCBI ID   WP_094428690.1    Uniprot ID   -
Organism   Shouchella clausii strain ATCC 700160     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1649479..1661764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR921_RS08030 (SR921_08030) - 1649485..1650747 (-) 1263 WP_094428696.1 replication-associated recombination protein A -
  SR921_RS08035 (SR921_08035) cymR 1651038..1651457 (+) 420 WP_062747479.1 cysteine metabolism transcriptional regulator CymR -
  SR921_RS08040 (SR921_08040) - 1651491..1652651 (+) 1161 WP_094429322.1 cysteine desulfurase family protein -
  SR921_RS08045 (SR921_08045) mnmA 1652681..1653775 (+) 1095 WP_094428694.1 tRNA 2-thiouridine(34) synthase MnmA -
  SR921_RS08050 (SR921_08050) - 1653815..1654474 (+) 660 WP_094428692.1 tetratricopeptide repeat protein -
  SR921_RS08055 (SR921_08055) recD2 1654479..1656764 (+) 2286 WP_094428690.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SR921_RS08060 (SR921_08060) - 1656815..1657285 (+) 471 WP_094428688.1 PRC-barrel domain-containing protein -
  SR921_RS08065 (SR921_08065) - 1657298..1657486 (+) 189 WP_011246434.1 hypothetical protein -
  SR921_RS08070 (SR921_08070) - 1657507..1657686 (+) 180 WP_035204549.1 hypothetical protein -
  SR921_RS08075 (SR921_08075) - 1657779..1658855 (+) 1077 WP_094428686.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 761 a.a.        Molecular weight: 85088.75 Da        Isoelectric Point: 6.3912

>NTDB_id=913019 SR921_RS08055 WP_094428690.1 1654479..1656764(+) (recD2) [Shouchella clausii strain ATCC 700160]
MGIVGEKTLEKGFVKGKVVHVLFRNEENDYTVAMTRIEKTNEQIEGHKITVVGHLPELEVEETYLFFGQVAEHPRFGLQY
KVETFRRDLPQTKSGIIRFLSSDRFPGVGKKTAEAIVDALGERAISAIIEDRTVLNNIPKLKEDTATMLYNQLLEQQGAE
QVIIQLSQYGFGTELSMSVYRTYKLQALDIIRTNPYLLIQDVEGVGFRRADQLGAAIGLTGNHPERLRAGLLYLLRECCM
QQGHLYLHKEALITEGAALLSSPNVQIEASELDAILIEMNEEGMLVREEDRVYMKSLYYAEKGIATNIRRILSQELTQEF
TEAEIEKTLGHIEETHAVTYSNTQKEAIATALRSPLLLLTGGPGTGKTTVIKGIVEAYAALHGLSLEVSAYKNKSLPLKL
TAPTGRASKRMAEATELPASTIHSLLGWKGSATGFEKGDHEQLEGELLIVDEMSMVDAWVANQLFKAIPKGMQVVLVGDE
NQLPSVGPGQVLKDLLEADVIPTIQLKDIYRQAEGSSIIELAHSMKDGVLPSDFLTKKADRVFFPCQPNQVQQAVWQICE
NAMKKGYSAKEIQVLAPMYRGQAGINELNTMLQSLFNPAKEGRRELPFGDVVFRKGDMVLQLVNNPEEGVYNGDRGEIVA
VFYAKETTEKKDQLVVSFDGLEVTYEKKDFSQLTHAYCCSIHKAQGSEFPIVVMPVVSSYMRMLRRNLLYTGITRAKQYL
LLCGDRKTMEQAIKHADEHRHSKLKERLQQLLSRTGNVHRG

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=913019 SR921_RS08055 WP_094428690.1 1654479..1656764(+) (recD2) [Shouchella clausii strain ATCC 700160]
ATGGGTATTGTTGGCGAAAAAACGCTGGAGAAAGGTTTTGTTAAAGGAAAAGTCGTTCATGTGTTGTTTCGCAATGAAGA
AAACGACTATACAGTGGCGATGACGCGGATTGAAAAGACGAATGAACAAATTGAAGGACACAAAATAACAGTTGTCGGCC
ACTTGCCTGAACTGGAAGTAGAGGAGACCTATTTATTTTTCGGGCAAGTCGCTGAACATCCACGCTTTGGCCTCCAATAC
AAAGTGGAAACGTTTAGGCGTGATTTGCCACAGACGAAAAGCGGAATTATTCGGTTTTTGTCAAGCGATCGTTTTCCTGG
CGTTGGCAAAAAGACAGCAGAAGCGATTGTCGACGCACTCGGTGAAAGGGCGATTTCAGCTATTATTGAAGACCGAACGG
TATTAAACAACATTCCGAAGCTAAAAGAAGATACAGCGACGATGCTTTATAACCAACTTCTTGAGCAACAAGGTGCAGAG
CAAGTCATTATCCAGCTGTCCCAATACGGGTTTGGCACAGAGTTGTCAATGAGTGTTTACCGAACGTACAAATTGCAAGC
ACTTGATATCATCCGTACCAACCCGTATTTGCTCATTCAGGATGTGGAAGGAGTCGGCTTTCGCCGCGCAGACCAATTAG
GGGCGGCGATTGGCTTAACTGGGAACCATCCAGAGCGTTTGCGGGCGGGGCTGCTTTATTTGCTCCGGGAATGTTGTATG
CAACAAGGCCATTTATACTTGCACAAAGAAGCGCTCATTACAGAAGGGGCTGCATTATTATCGAGCCCCAACGTCCAAAT
TGAAGCTTCCGAGCTTGATGCCATCCTCATCGAAATGAATGAAGAGGGCATGCTCGTTCGTGAAGAAGATCGCGTCTACA
TGAAGTCATTGTATTATGCAGAAAAAGGAATTGCCACCAACATCCGCCGAATTTTAAGTCAAGAACTGACACAAGAATTC
ACTGAAGCAGAAATCGAAAAAACACTCGGGCATATTGAGGAAACACATGCTGTTACCTATTCAAACACGCAAAAAGAAGC
GATTGCTACTGCTCTTCGATCTCCGCTGTTGTTGCTGACAGGTGGGCCAGGAACAGGAAAGACTACGGTCATTAAAGGAA
TTGTTGAAGCTTATGCTGCGCTTCATGGGCTTTCTCTTGAAGTGTCTGCTTACAAAAATAAATCTTTGCCCCTTAAGTTG
ACAGCGCCCACTGGTCGAGCCAGCAAACGGATGGCTGAAGCAACGGAACTGCCTGCAAGCACGATACACAGCTTGCTCGG
CTGGAAAGGCAGTGCGACCGGCTTTGAAAAAGGCGACCATGAACAGCTTGAAGGGGAACTGTTAATTGTCGATGAGATGT
CGATGGTCGATGCCTGGGTTGCAAACCAGTTATTTAAAGCGATCCCCAAAGGCATGCAAGTCGTGTTAGTTGGGGATGAA
AACCAGTTGCCTTCTGTAGGGCCTGGCCAAGTATTAAAAGATCTTTTAGAAGCAGACGTTATTCCAACGATCCAATTAAA
GGACATTTACAGGCAAGCTGAAGGCTCTTCCATCATTGAGCTTGCCCATTCGATGAAGGATGGCGTGCTTCCAAGTGATT
TTTTAACGAAAAAGGCAGACCGCGTCTTTTTTCCTTGCCAGCCGAACCAAGTGCAACAAGCAGTTTGGCAAATTTGTGAA
AACGCCATGAAGAAAGGCTACAGTGCTAAAGAGATCCAAGTACTGGCACCCATGTACCGAGGGCAGGCAGGGATCAATGA
ATTAAACACGATGCTTCAGTCCTTATTTAATCCGGCAAAAGAAGGCCGTCGAGAGCTGCCATTTGGGGATGTTGTTTTTC
GCAAAGGCGATATGGTGCTCCAGCTAGTCAACAATCCAGAGGAAGGCGTATACAACGGCGATAGAGGGGAAATTGTTGCT
GTTTTTTATGCTAAAGAGACGACGGAAAAAAAAGATCAGTTAGTGGTTTCCTTTGACGGACTGGAAGTCACCTATGAGAA
AAAAGACTTTTCACAGCTAACCCATGCCTATTGCTGTTCTATCCATAAAGCACAAGGAAGCGAATTTCCGATTGTGGTGA
TGCCAGTCGTGTCGAGCTACATGCGCATGCTGAGGCGGAACTTGCTTTATACAGGCATTACCAGGGCCAAGCAGTATTTG
CTCTTATGTGGCGATCGGAAAACGATGGAACAGGCGATTAAACATGCAGACGAGCACCGCCATTCCAAATTAAAGGAGCG
CCTTCAACAATTGCTTTCACGTACTGGTAACGTTCACCGGGGATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-246)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-658)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(675-723)

AAA domain (AAA_30)

(340-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.034

97.898

0.539