Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SR921_RS07945 Genome accession   NZ_CP140150
Coordinates   1629129..1631486 (+) Length   785 a.a.
NCBI ID   WP_094428720.1    Uniprot ID   -
Organism   Shouchella clausii strain ATCC 700160     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1624129..1636486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR921_RS07915 (SR921_07915) - 1624201..1624440 (+) 240 WP_094428732.1 hypothetical protein -
  SR921_RS07920 (SR921_07920) spoVB 1624477..1626027 (-) 1551 WP_094428730.1 stage V sporulation protein B -
  SR921_RS07925 (SR921_07925) - 1626196..1626486 (+) 291 WP_094428728.1 post-transcriptional regulator -
  SR921_RS07930 (SR921_07930) secD 1626521..1627822 (+) 1302 WP_094428726.1 protein translocase subunit SecD -
  SR921_RS07935 (SR921_07935) secF 1627812..1628747 (+) 936 WP_094428724.1 protein translocase subunit SecF -
  SR921_RS07940 (SR921_07940) - 1628765..1629067 (+) 303 WP_094428722.1 lipopolysaccharide assembly LapA domain-containing protein -
  SR921_RS07945 (SR921_07945) recJ 1629129..1631486 (+) 2358 WP_094428720.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SR921_RS07950 (SR921_07950) - 1631476..1631991 (+) 516 WP_094428718.1 adenine phosphoribosyltransferase -
  SR921_RS07955 (SR921_07955) - 1632104..1634311 (+) 2208 WP_216924180.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  SR921_RS07960 (SR921_07960) dtd 1634332..1634772 (+) 441 WP_094428714.1 D-aminoacyl-tRNA deacylase -
  SR921_RS07965 (SR921_07965) - 1635020..1635970 (+) 951 WP_094428712.1 IS30 family transposase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87719.43 Da        Isoelectric Point: 5.1109

>NTDB_id=913018 SR921_RS07945 WP_094428720.1 1629129..1631486(+) (recJ) [Shouchella clausii strain ATCC 700160]
MLQAKTRWRILEQNELLAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYEEPTFYDPFLLKGMEETIERIALAVKRN
ERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFTEGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDI
GLDFIITDHHEPPPVLPEALAIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPEELLDYAVIGTIADLVPLVDENRLL
AKKGLRAIESSGRPGIRALKEVCSIKQEAMDADHIGFAIGPRLNAAGRLDSANPAVELLLADEDEEAKALATEIDSLNKE
RQAIVSKMTEEAIRLVETTYGTKIPHAIVVAKEGWNPGVIGIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMY
RELANNRDILPHFGGHPMAAGMTLKTNDIGDLRSRLIEQAKQTLTDDMLTPATDIDLVAEVEDVTVQVIGELQALAPFGV
ANRKPIVLVEDAHISDMRRIGSNQNHLKIQFAGAQKPLDGIAFRMGHLYEEITPHAKLSAIGTVSLNEWNGKVKPQLIID
DLAVLEWQLFDWRSIQPNRLNSRLLDLPREKLVAISFQEGTKERLGLDVPVYDYQQAPSFFEAYVVLLDLPSNRVELETL
FSKKGKPSRVYVVFSEEEESFFQTNPNREQFKWYYGFIKKKQRFSLNQLGAKLEKHKGWSARTVEFMTTVFLELGFIKLD
AGIVEAVENPEKKALTASPTYQAKQEKAWLENEFVFASYQQLKEWFQAAIEGSAETKEESILNGL

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=913018 SR921_RS07945 WP_094428720.1 1629129..1631486(+) (recJ) [Shouchella clausii strain ATCC 700160]
ATGTTGCAAGCAAAAACAAGATGGCGCATTTTAGAACAGAACGAGCTGTTGGCGCAAGAGCTCGCAGACGAGCTGCGTGT
ATCGATGTTAACGGCCCGTCTGCTTGTACGCCGGGGAATCCAAACAGTCCAGGCGGCCAAGCGCTTTTTACACTACGAAG
AGCCGACGTTTTACGATCCCTTCTTGTTGAAAGGGATGGAAGAAACGATTGAACGAATCGCCCTCGCAGTCAAACGGAAC
GAACGCATTCTTGTTTTTGGTGACTATGATGCTGATGGTGTCAGTTCTACTTCCGTGATGCTAACAGCGTTACAAACGTA
TGGCGCCGACTGTGATTACTATATACCAAACCGTTTTACAGAAGGATACGGGCCCAATTGCCCAGCGCTTGACTTTGCAA
AAAGGCAAGGTTATCACTTAGTGATAACAGTCGATACAGGCATTTCTGCTTTGAATGAAGCTGCTCATGCCAAAGACATC
GGCCTGGATTTTATTATCACTGACCACCACGAGCCGCCGCCGGTTTTGCCAGAGGCATTGGCGATCATTAATCCTAAGCA
GCCTGGTTGCCCGTATCCATTTAAAGAGCTTGCCGGTGTAGGCGTTGCCTTTAAAGTTGCACACGCTTTGCTCGGGCGCC
TGCCTGAAGAGTTGCTCGATTATGCTGTGATCGGTACGATCGCCGATTTGGTCCCACTCGTCGATGAAAATCGGCTGTTG
GCCAAAAAGGGGCTTCGCGCAATTGAATCAAGCGGCCGCCCTGGGATCCGTGCCTTAAAGGAAGTATGCAGCATAAAGCA
GGAAGCAATGGACGCCGACCATATCGGCTTTGCGATTGGGCCTCGTCTAAATGCGGCAGGGCGGCTTGATTCTGCTAATC
CAGCCGTTGAGCTGCTCCTAGCTGATGAAGATGAAGAAGCAAAAGCGCTAGCCACAGAAATCGATAGCCTCAATAAAGAA
CGGCAAGCAATTGTTAGCAAAATGACAGAAGAAGCGATTCGCCTTGTTGAAACAACTTATGGCACAAAGATCCCTCATGC
CATCGTTGTAGCGAAGGAAGGCTGGAATCCAGGGGTCATCGGAATTGTTGCTTCTCGCCTTGTAGAACAGTTTTACCGTC
CGACAATTGTCATGAGCATTGACGAATCTTCAGGACTTGCCAAAGGCTCGGCCAGAAGCATTGAAGGGTTTGACATGTAC
CGGGAATTAGCGAATAATCGGGACATACTCCCTCATTTTGGTGGACACCCGATGGCAGCAGGGATGACACTTAAAACAAA
CGACATTGGCGACTTACGTTCTCGTTTAATCGAGCAAGCCAAGCAGACACTTACTGACGACATGCTTACACCTGCCACGG
ATATAGACCTCGTTGCAGAGGTGGAGGATGTCACCGTTCAAGTGATTGGCGAGTTGCAGGCACTTGCTCCGTTTGGCGTT
GCCAACCGTAAACCGATTGTACTTGTTGAGGATGCGCACATTTCCGATATGCGTCGGATTGGCAGCAACCAAAACCATTT
GAAAATCCAGTTTGCTGGCGCCCAAAAGCCGCTTGACGGAATAGCTTTTAGAATGGGGCATCTGTATGAAGAGATCACGC
CACATGCAAAGTTATCAGCAATCGGAACGGTATCGTTGAATGAATGGAACGGAAAAGTAAAACCACAGCTTATTATTGAC
GATCTCGCCGTATTGGAGTGGCAACTATTTGATTGGCGTAGCATCCAGCCAAACCGCTTAAACAGTCGGTTGCTTGACTT
GCCTCGTGAAAAACTCGTCGCTATTTCCTTTCAAGAAGGGACAAAGGAAAGACTTGGGTTGGATGTACCGGTATATGATT
ACCAACAAGCGCCTTCCTTTTTTGAAGCTTATGTCGTATTGCTCGATTTGCCTAGCAACCGGGTTGAATTGGAAACTCTT
TTTTCTAAGAAAGGGAAACCAAGCCGTGTTTATGTTGTGTTCTCGGAGGAGGAAGAATCGTTTTTTCAAACGAATCCAAA
CCGTGAGCAGTTCAAATGGTATTACGGATTTATTAAGAAAAAACAACGCTTTTCACTGAATCAACTCGGCGCTAAGCTTG
AAAAGCACAAAGGCTGGTCAGCCCGCACGGTCGAATTTATGACCACTGTATTTTTAGAACTTGGTTTTATTAAGCTTGAC
GCCGGCATCGTTGAAGCCGTAGAAAACCCTGAAAAAAAAGCGTTGACTGCATCGCCGACTTACCAAGCCAAGCAGGAAAA
AGCATGGCTTGAAAATGAATTTGTTTTTGCTTCTTATCAACAGTTAAAAGAATGGTTCCAGGCTGCCATCGAAGGGAGCG
CTGAAACAAAAGAGGAGTCGATCCTAAATGGATTATAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

50

100

0.502