Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABII15_RS06720 Genome accession   NZ_CP159534
Coordinates   1456800..1458161 (-) Length   453 a.a.
NCBI ID   WP_353941350.1    Uniprot ID   A0AAU8IP01
Organism   Streptomyces sp. HUAS MG91     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1451800..1463161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABII15_RS06700 (ABII15_06700) - 1451978..1452424 (-) 447 WP_353941347.1 DUF948 domain-containing protein -
  ABII15_RS06705 (ABII15_06705) - 1452597..1454807 (+) 2211 WP_353941348.1 AAA family ATPase -
  ABII15_RS06710 (ABII15_06710) rpsD 1454838..1455452 (-) 615 WP_018534860.1 30S ribosomal protein S4 -
  ABII15_RS06715 (ABII15_06715) - 1455794..1456477 (-) 684 WP_353941349.1 HNH endonuclease family protein -
  ABII15_RS06720 (ABII15_06720) rarA 1456800..1458161 (-) 1362 WP_353941350.1 replication-associated recombination protein A Machinery gene
  ABII15_RS06725 (ABII15_06725) - 1458207..1458854 (-) 648 WP_353941351.1 vitamin K epoxide reductase family protein -
  ABII15_RS06730 (ABII15_06730) - 1458995..1459867 (+) 873 WP_353941352.1 ABC transporter ATP-binding protein -
  ABII15_RS06735 (ABII15_06735) - 1459864..1460727 (+) 864 WP_353941353.1 ABC transporter permease -
  ABII15_RS06740 (ABII15_06740) - 1460703..1461920 (+) 1218 WP_353946978.1 sensor histidine kinase -
  ABII15_RS06745 (ABII15_06745) - 1461917..1462540 (+) 624 WP_353941354.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48006.45 Da        Isoelectric Point: 6.1497

>NTDB_id=912682 ABII15_RS06720 WP_353941350.1 1456800..1458161(-) (rarA) [Streptomyces sp. HUAS MG91]
MEPDLFTAAAEERQEKDPSASPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGGGGPAGASSVILWGPPGIGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIEGARRAMGGHGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRGLLARALTDERGLGGAVTLAEDAEEHLLRVAGGDARRALTALEAAAGAALAKSEEA
ITLESVEETVNRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PLAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAAMEDVRKGLAGQVPAHLRDGHYKGAAKLGHAQGYVY
PHDVPGGIAAQQYAPDAIAGRRYYEPTRYGAEARYADVVERVRERLRGDSSTG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=912682 ABII15_RS06720 WP_353941350.1 1456800..1458161(-) (rarA) [Streptomyces sp. HUAS MG91]
GTGGAACCCGACCTCTTCACCGCCGCAGCCGAAGAACGCCAGGAGAAGGACCCCTCCGCGAGCCCCCTGGCCGTCCGGAT
GCGCCCGCGCACCCTCGACGAAGTCGTCGGACAGCAGCACCTGCTCAAGCCGGGCTCGCCGCTGCGCCGCCTGGTCGGCG
AGGGCGGCGGCGGTCCGGCCGGTGCCTCGTCGGTGATCCTGTGGGGCCCGCCCGGCATCGGCAAGACGACCCTCGCCTAC
GTCGTCTCCAAGGCGACGAACAAGCGGTTTGTGGAGCTGTCCGCGATCACCGCAGGCGTCAAGGAGGTCCGGGCCGTCAT
CGAGGGCGCCCGGCGCGCCATGGGCGGGCACGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCGCTGCTGCCCGCGGTGGAGAACCGCTGGGTGACGCTGATCGCGGCGACCACGGAGAACCCGTACTTC
TCGGTGATCTCACCGCTGCTCTCCCGCTCCCTGCTGCTGACGCTGGAGCCGCTGACCGACGACGACCTGCGCGGGCTGCT
CGCGCGGGCGCTGACGGACGAGCGCGGTCTCGGCGGGGCCGTGACCCTGGCCGAGGACGCCGAGGAGCACCTGCTGCGCG
TCGCGGGCGGGGACGCCCGGCGCGCGCTCACCGCCCTGGAGGCCGCCGCCGGAGCCGCCCTCGCCAAGAGCGAGGAGGCC
ATCACCCTCGAGAGCGTCGAGGAGACCGTCAATCGCGCGGCGGTGAAGTACGACCGTGACGGCGACCAGCACTACGACGT
CGCCAGCGCCCTCATCAAGTCCATCCGCGGCTCCGACGTGGACGCCGCGCTGCACTATCTGGCCCGCATGATCGAGGCCG
GCGAGGATCCGCGCTTCATCGCCAGGCGGCTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGACCCGACGGCGCTG
CCCCTCGCGGTCGCCGCCGCGCAGGCCGTCGCCATGATCGGCTTCCCGGAAGCCGCGCTGACCCTGAGCCACGCCACGAT
CGCCCTCGCCCTGGCTCCCAAGTCGAACGCGGCGACCACCGCGATCGGCGCCGCCATGGAGGACGTCCGCAAGGGCCTCG
CCGGCCAGGTCCCGGCCCATCTTCGTGACGGCCATTACAAGGGCGCCGCCAAGCTGGGGCACGCCCAGGGGTACGTGTAT
CCGCATGACGTGCCCGGCGGGATCGCGGCCCAGCAGTACGCGCCGGACGCCATCGCGGGGCGCCGCTATTACGAGCCCAC
TCGCTACGGGGCCGAGGCGCGCTATGCCGACGTGGTCGAGCGGGTCCGAGAGCGCTTGCGCGGCGACTCCAGCACGGGCT
GA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAU8IP01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.221

94.702

0.428