Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   U2W41_RS08190 Genome accession   NZ_CP140113
Coordinates   1605192..1606694 (-) Length   500 a.a.
NCBI ID   WP_010921891.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NV28     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1600192..1611694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2W41_RS09250 - 1602150..1602233 (+) 84 Protein_1553 IS3 family transposase -
  U2W41_RS08175 (U2W41_08175) amiF 1602271..1603194 (-) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  U2W41_RS08180 (U2W41_08180) amiE 1603187..1604257 (-) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  U2W41_RS08185 (U2W41_08185) amiD 1604266..1605192 (-) 927 WP_010921892.1 oligopeptide ABC transporter permease OppC Regulator
  U2W41_RS08190 (U2W41_08190) amiC 1605192..1606694 (-) 1503 WP_010921891.1 ABC transporter permease Regulator
  U2W41_RS08195 (U2W41_08195) amiA 1606759..1608729 (-) 1971 WP_011285389.1 peptide ABC transporter substrate-binding protein Regulator
  U2W41_RS08200 (U2W41_08200) pbp3 1609060..1610292 (+) 1233 WP_010921890.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  U2W41_RS08205 (U2W41_08205) - 1610460..1611641 (+) 1182 WP_015055912.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56080.41 Da        Isoelectric Point: 10.1893

>NTDB_id=912682 U2W41_RS08190 WP_010921891.1 1605192..1606694(-) (amiC) [Streptococcus pyogenes strain NV28]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDSFSTA
TMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=912682 U2W41_RS08190 WP_010921891.1 1605192..1606694(-) (amiC) [Streptococcus pyogenes strain NV28]
ATGAAAAAATATATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTCTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACACCAGATAAAAAAG
TAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTATCTATGAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAAAACGCTTCCCCACTAGCAAACAGTTTTATGCAATTCGCAATATCCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGATAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAGTATCTCCTCTATACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCTTAAACTTAGGGACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTCATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTTGGTGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACAGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTGGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGCGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACATTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCTA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.8

100

0.598
  amiC Streptococcus thermophilus LMD-9

59.4

100

0.594
  amiC Streptococcus thermophilus LMG 18311

59.4

100

0.594