Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SO574_RS00705 Genome accession   NZ_CP140102
Coordinates   150356..151144 (-) Length   262 a.a.
NCBI ID   WP_322803434.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145356..156144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS00680 (SO574_00680) - 146401..146892 (+) 492 WP_221069762.1 type II secretion system protein M -
  SO574_RS00685 (SO574_00685) - 146894..147655 (+) 762 WP_221068483.1 type II secretion system protein N -
  SO574_RS00690 (SO574_00690) cysQ 148051..148878 (-) 828 WP_128812014.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  SO574_RS00695 (SO574_00695) nudE 148942..149505 (-) 564 WP_211915593.1 ADP compounds hydrolase NudE -
  SO574_RS00700 (SO574_00700) nfuA 149674..150258 (-) 585 WP_322803433.1 Fe-S biogenesis protein NfuA -
  SO574_RS00705 (SO574_00705) comF 150356..151144 (-) 789 WP_322803434.1 phosphoribosyltransferase family protein Machinery gene
  SO574_RS00710 (SO574_00710) bioH 151229..151993 (+) 765 WP_322803435.1 pimeloyl-ACP methyl ester esterase BioH -
  SO574_RS00715 (SO574_00715) - 152124..152588 (+) 465 WP_128812006.1 ATP-dependent Lon protease -
  SO574_RS00720 (SO574_00720) - 152716..155034 (-) 2319 WP_322803436.1 Tex family protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29656.13 Da        Isoelectric Point: 9.0786

>NTDB_id=912504 SO574_RS00705 WP_322803434.1 150356..151144(-) (comF) [Vibrio alfacsensis strain VA-1]
MLSHQWQNIMHRVLGSQCGLCRFPINASQATNPLRWCEHCFAQLNPIQRCARCGLSMTNEQAVTTVLASTKQANQVNQTT
QIDQAKTQCGACLRDPPPWQRLFTLGDYDFPLSVQVQRFKDHGEPWHVNALTQLLAQRIEHPAPVITCVPLHWQRYLKRG
FNQSHTLARYLANHLEVRFEPNVFKRIKSVPSQRGHKKSNRELNLKGAFALKGKVRDSHVAIVDDVVTTGSTVRQLCDLL
LEVGVESIDIYCICRTPAPGSL

Nucleotide


Download         Length: 789 bp        

>NTDB_id=912504 SO574_RS00705 WP_322803434.1 150356..151144(-) (comF) [Vibrio alfacsensis strain VA-1]
ATGTTATCTCATCAATGGCAAAACATCATGCACCGTGTGTTGGGCAGTCAATGTGGTTTATGTCGATTTCCAATTAACGC
CTCTCAAGCGACCAATCCACTACGCTGGTGCGAGCACTGTTTTGCTCAACTTAACCCCATACAACGTTGCGCTCGGTGCG
GTTTATCGATGACAAATGAGCAGGCTGTTACCACCGTTCTTGCTTCTACTAAGCAAGCGAATCAAGTCAACCAAACGACT
CAAATCGACCAAGCCAAAACACAATGTGGGGCATGCCTGCGCGATCCCCCGCCATGGCAGCGCTTGTTCACACTGGGTGA
TTATGACTTCCCACTCTCAGTCCAAGTTCAACGATTTAAAGATCACGGTGAACCTTGGCACGTTAATGCACTCACTCAAT
TACTTGCACAACGAATTGAGCATCCCGCGCCAGTTATCACCTGCGTACCTCTGCATTGGCAACGGTACCTAAAGCGAGGT
TTCAATCAAAGCCATACTCTTGCAAGATACTTAGCAAACCACCTTGAGGTAAGGTTTGAACCCAACGTGTTTAAACGCAT
CAAGAGTGTTCCATCACAACGGGGGCATAAGAAAAGCAACCGGGAGCTAAATTTGAAAGGTGCATTTGCACTAAAAGGCA
AAGTGCGCGATTCTCATGTCGCAATTGTGGATGATGTCGTCACAACGGGCAGTACCGTCCGACAATTATGTGATTTACTA
CTTGAAGTCGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCTGGCTCACTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

70.611

100

0.706
  comF Vibrio cholerae strain A1552

45.56

98.855

0.45