Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   U2P90_RS16740 Genome accession   NZ_CP140098
Coordinates   3437119..3437727 (+) Length   202 a.a.
NCBI ID   WP_295822518.1    Uniprot ID   -
Organism   Deinococcus sp. AB2017081     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3432119..3442727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2P90_RS16725 (U2P90_16725) - 3432664..3433341 (+) 678 WP_295822513.1 NUDIX hydrolase -
  U2P90_RS16730 (U2P90_16730) - 3433407..3436448 (-) 3042 WP_322473019.1 vWA domain-containing protein -
  U2P90_RS16735 (U2P90_16735) - 3436737..3437027 (+) 291 WP_295822516.1 YbaB/EbfC family nucleoid-associated protein -
  U2P90_RS16740 (U2P90_16740) recR 3437119..3437727 (+) 609 WP_295822518.1 recombination mediator RecR Machinery gene
  U2P90_RS16745 (U2P90_16745) - 3437901..3438056 (-) 156 WP_322473020.1 hypothetical protein -
  U2P90_RS16750 (U2P90_16750) - 3438120..3438803 (-) 684 WP_322473021.1 polysaccharide deacetylase family protein -
  U2P90_RS16755 (U2P90_16755) - 3438823..3440025 (-) 1203 WP_295822523.1 MFS transporter -
  U2P90_RS16760 (U2P90_16760) - 3440079..3440777 (+) 699 WP_295822749.1 glycosyltransferase family 2 protein -
  U2P90_RS16765 (U2P90_16765) - 3440713..3441900 (-) 1188 WP_322473022.1 glycosyltransferase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21823.17 Da        Isoelectric Point: 6.0117

>NTDB_id=912499 U2P90_RS16740 WP_295822518.1 3437119..3437727(+) (recR) [Deinococcus sp. AB2017081]
MKYPPSLVALIRELSRLPGIGAKSAQRLAFHLFEQPREDIERLASALLEAKRDLHSCPICFNITDAERCDVCSDPSRDQS
VICVVEEPGDVLAIERSGEYRGLYHVLHGVLSPMNGVGPDRLHIKPLLPRVAEGMEVILATGTTVEGDATALYLGRLLEP
LGATVSRIAYGLPVGGALEYADEVTLGRAMAGRQRVSKPTPG

Nucleotide


Download         Length: 609 bp        

>NTDB_id=912499 U2P90_RS16740 WP_295822518.1 3437119..3437727(+) (recR) [Deinococcus sp. AB2017081]
ATGAAATACCCCCCCTCCCTGGTCGCCCTGATCCGCGAACTGTCGCGCCTGCCGGGCATCGGCGCGAAGAGCGCTCAGCG
GCTGGCCTTCCACCTCTTCGAGCAGCCCCGCGAGGACATCGAGCGGCTGGCCTCCGCCCTGCTGGAAGCCAAGCGTGACC
TGCATTCGTGTCCCATCTGCTTCAACATCACCGACGCCGAGCGCTGCGACGTGTGCAGTGATCCCAGCCGCGACCAGAGC
GTGATCTGCGTGGTCGAGGAACCCGGTGACGTCCTGGCGATCGAACGCAGCGGCGAGTACCGGGGCCTGTATCACGTCCT
GCACGGCGTCCTGAGCCCCATGAACGGCGTCGGGCCCGACCGCCTGCACATCAAGCCCCTGCTGCCCCGCGTCGCGGAGG
GCATGGAGGTCATCCTGGCGACCGGCACCACCGTCGAGGGCGACGCCACGGCGCTGTACCTCGGGCGTCTGCTCGAACCC
CTGGGGGCCACGGTCAGCCGCATCGCGTATGGCCTGCCCGTGGGCGGGGCGCTGGAATACGCCGACGAGGTGACGCTGGG
CCGCGCCATGGCCGGCCGTCAGCGCGTCAGCAAGCCGACGCCGGGCTGA

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

89.055

99.505

0.886