Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   U2P90_RS04610 Genome accession   NZ_CP140098
Coordinates   945405..946046 (+) Length   213 a.a.
NCBI ID   WP_322473992.1    Uniprot ID   -
Organism   Deinococcus sp. AB2017081     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 940405..951046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2P90_RS04575 (U2P90_04575) - 940628..941077 (+) 450 WP_322473987.1 hypothetical protein -
  U2P90_RS04580 (U2P90_04580) gatC 941109..941399 (+) 291 WP_322473988.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  U2P90_RS04585 (U2P90_04585) serS 941470..942747 (+) 1278 WP_322473989.1 serine--tRNA ligase -
  U2P90_RS04590 (U2P90_04590) - 942764..943915 (-) 1152 WP_322473990.1 GGDEF domain-containing protein -
  U2P90_RS04595 (U2P90_04595) - 944021..944458 (+) 438 WP_295816678.1 hypothetical protein -
  U2P90_RS04600 (U2P90_04600) - 944463..944744 (-) 282 WP_295816676.1 hypothetical protein -
  U2P90_RS04605 (U2P90_04605) - 944900..945412 (+) 513 WP_322473991.1 hypothetical protein -
  U2P90_RS04610 (U2P90_04610) comF 945405..946046 (+) 642 WP_322473992.1 ComF family protein Machinery gene
  U2P90_RS04615 (U2P90_04615) - 946060..946461 (-) 402 WP_322473993.1 methylglyoxal synthase -
  U2P90_RS04620 (U2P90_04620) - 946489..947346 (-) 858 WP_322473994.1 DUF1206 domain-containing protein -
  U2P90_RS04625 (U2P90_04625) - 947482..948513 (+) 1032 WP_322473995.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  U2P90_RS04630 (U2P90_04630) - 948557..949138 (+) 582 WP_295816665.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22290.81 Da        Isoelectric Point: 10.7762

>NTDB_id=912492 U2P90_RS04610 WP_322473992.1 945405..946046(+) (comF) [Deinococcus sp. AB2017081]
MADPAATLSGWLRRLLPQPCPGCGAQLGAERGLCPACRAGLRPRVDSHSPLRGRAQPHLITLGEYRGVHRRAVRALKFGG
ARDLAGVLGEALAAGVPQDWNVRAVVPVPLHASRQRQRGFNQAALLGSVVAVQLGVPCVDALIRTRATGQQAKQHAAQRD
HMDGAFALRPGVLPPGAVLIVDDVLTTGATLNACQEVVLGSGVPEVYAAVVAR

Nucleotide


Download         Length: 642 bp        

>NTDB_id=912492 U2P90_RS04610 WP_322473992.1 945405..946046(+) (comF) [Deinococcus sp. AB2017081]
GTGGCTGACCCGGCGGCCACGCTGTCAGGCTGGCTGCGCCGCCTGCTGCCGCAACCCTGCCCCGGCTGCGGCGCGCAACT
GGGCGCCGAGCGGGGGCTGTGCCCGGCGTGCCGGGCGGGCCTGCGGCCCCGTGTCGACAGCCACAGCCCCCTGCGTGGCC
GGGCGCAGCCGCACCTGATCACCCTGGGCGAGTACCGGGGCGTGCACCGCCGCGCCGTGCGCGCCCTGAAATTCGGCGGG
GCGCGGGATCTGGCGGGCGTGCTGGGCGAGGCGCTCGCAGCCGGAGTCCCGCAGGACTGGAATGTGCGTGCGGTGGTGCC
GGTGCCGCTGCACGCCTCGCGCCAGCGGCAGCGGGGCTTCAACCAGGCGGCGCTGCTGGGCAGCGTGGTGGCCGTGCAGC
TGGGGGTGCCGTGTGTGGACGCCCTGATCCGCACCCGCGCCACCGGGCAGCAGGCGAAACAGCATGCCGCGCAGCGCGAT
CACATGGACGGCGCCTTCGCGCTGCGCCCAGGCGTGCTCCCGCCGGGCGCCGTGTTGATCGTCGACGACGTGCTCACCAC
CGGGGCCACGCTGAACGCGTGTCAGGAGGTCGTGCTGGGCTCCGGTGTGCCCGAGGTCTATGCCGCCGTCGTCGCCCGCT
GA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(123-212)

Double zinc ribbon domain (DZR_2)

(12-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.039

95.305

0.61
  comF Vibrio cholerae strain A1552

33.333

100

0.371