Detailed information NTG0912483

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: U2P90_RS00680
• Genome accession: NZ_CP140098
• Coordinates: 130642..131796 (+)
• Length: 384 a.a.
• NCBI ID: WP_322473345.1
• Uniprot ID: -
• Organism: Deinococcus sp. AB2017081
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 125642..136796

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U2P90_RS00665 (U2P90_00665)	-	126690..126926 (+)	237	WP_295816336.1	hypothetical protein	-
U2P90_RS00670 (U2P90_00670)	rimO	127057..128538 (+)	1482	WP_322473343.1	30S ribosomal protein S12 methylthiotransferase RimO	-
U2P90_RS00675 (U2P90_00675)	-	129031..130368 (-)	1338	WP_322473344.1	S8 family serine peptidase	-
U2P90_RS00680 (U2P90_00680)	pilD	130642..131796 (+)	1155	WP_322473345.1	prepilin peptidase	Machinery gene
U2P90_RS00685 (U2P90_00685)	-	131856..132305 (-)	450	WP_295816343.1	superoxide dismutase	-
U2P90_RS00690 (U2P90_00690)	-	132526..133968 (+)	1443	WP_322473346.1	aldehyde dehydrogenase family protein	-
U2P90_RS00695 (U2P90_00695)	-	133961..134509 (+)	549	WP_322473347.1	molybdenum cofactor guanylyltransferase	-
U2P90_RS00700 (U2P90_00700)	-	134513..136351 (-)	1839	WP_322473348.1	menaquinone biosynthesis decarboxylase	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 40562.96 Da
• Isoelectric Point: 7.6918

>NTDB_id=912483 U2P90_RS00680 WP_322473345.1 130642..131796(+) (pilD) [Deinococcus sp. AB2017081]
MTPDVLIVIFAGVLGLLVGSFSNVLIWRLPRRENIAFPPSHCPHCDHRLGVIDLVPVASWLSLGGKCRYCRAPIKARYPV
VELLTGLGYAVIAMLFPPLTVGWGALGLMLLFTLLLVGSAIDLDTFTIPDELTLPGVALGLIFGFLNGRAGVGTLPDFAG
AVQGALLGAGLLVAINQFGSWVLRRFRERSYPELPIGYQQISLGLIAGAWLGPWWGTGVGVLSAAVNMAAGRVIRVPEWL
TLGGLLLSLVLGSAGTGPGMILMVQGALAAAGGVSLVAGVYWWLRREPEDEAAGTDSAEEPYDASAMGFGDVKLAAVIGA
FLGWERLLVALVIAVFAGAILGVAQLAMKRENRVKFGPYLALGAVVALIWGQQWVSGYRQLLGL

Nucleotide

• Length: 1155 bp

>NTDB_id=912483 U2P90_RS00680 WP_322473345.1 130642..131796(+) (pilD) [Deinococcus sp. AB2017081]
GTGACTCCCGATGTGCTGATCGTGATCTTTGCCGGAGTGCTGGGCCTGCTGGTGGGATCGTTCTCGAACGTGCTGATCTG
GCGGCTGCCCCGGCGTGAGAACATCGCGTTTCCGCCCAGCCACTGCCCCCACTGCGACCACCGGCTGGGGGTGATCGATC
TGGTGCCGGTGGCGTCGTGGCTGTCCCTGGGCGGGAAGTGCCGGTACTGCCGGGCACCCATCAAGGCCCGCTACCCGGTC
GTGGAACTCCTGACGGGCCTGGGCTACGCCGTGATCGCCATGCTGTTCCCGCCGCTGACGGTCGGCTGGGGCGCACTGGG
CCTGATGCTCCTGTTCACGCTGCTGCTGGTCGGCAGTGCCATTGATCTGGACACCTTCACGATCCCCGACGAACTGACCC
TGCCGGGCGTGGCGCTGGGCCTGATCTTCGGGTTCCTGAACGGCCGGGCGGGCGTGGGCACCCTGCCGGACTTCGCGGGC
GCGGTGCAGGGGGCGCTGCTGGGCGCGGGCCTGCTGGTGGCGATCAACCAGTTCGGGTCGTGGGTGCTGCGCCGCTTCCG
CGAGCGCTCGTACCCGGAGTTGCCCATCGGCTACCAGCAGATCAGCCTGGGATTGATCGCCGGCGCGTGGCTGGGGCCGT
GGTGGGGCACCGGCGTGGGCGTGCTCTCGGCGGCGGTGAACATGGCCGCCGGGCGCGTGATCCGGGTGCCGGAATGGCTG
ACCCTGGGCGGCCTGCTGCTCAGTCTGGTGCTGGGCAGTGCCGGCACCGGCCCCGGCATGATCCTGATGGTGCAGGGGGC
GCTGGCCGCCGCCGGGGGCGTGTCGCTGGTGGCGGGGGTGTACTGGTGGCTCCGGCGCGAGCCGGAGGACGAGGCAGCCG
GCACGGACAGTGCCGAGGAACCCTACGACGCCTCGGCCATGGGCTTCGGCGACGTGAAACTGGCGGCCGTGATCGGCGCG
TTCCTGGGCTGGGAGCGGCTGCTGGTGGCGCTGGTCATCGCCGTGTTCGCCGGAGCGATCCTGGGCGTGGCCCAGCTCGC
CATGAAACGCGAGAACCGCGTGAAGTTCGGCCCCTATCTCGCCCTGGGCGCCGTGGTGGCGCTGATCTGGGGCCAGCAGT
GGGTGAGCGGCTACCGGCAACTGCTCGGGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-95)

• Type IV leader peptidase family (Peptidase_A24) (234-343)

• Type IV leader peptidase family (Peptidase_A24) (109-224)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	69.744	100	0.708