Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0021_RS03040 Genome accession   NZ_CP139961
Coordinates   691226..692740 (-) Length   504 a.a.
NCBI ID   WP_114800265.1    Uniprot ID   -
Organism   Moraxella canis strain HAMBI_2792     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 686226..697740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0021_RS03025 (U0021_03025) map 687440..688228 (-) 789 WP_114800267.1 type I methionyl aminopeptidase -
  U0021_RS03030 (U0021_03030) - 688376..688705 (-) 330 WP_049237051.1 TIGR01244 family sulfur transferase -
  U0021_RS03035 (U0021_03035) - 688975..691125 (+) 2151 WP_114800266.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
  U0021_RS03040 (U0021_03040) comM 691226..692740 (-) 1515 WP_114800265.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0021_RS03045 (U0021_03045) rapA 692828..695692 (-) 2865 WP_114800264.1 RNA polymerase-associated protein RapA -
  U0021_RS03050 (U0021_03050) - 695878..696834 (+) 957 WP_114800295.1 D-2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54446.46 Da        Isoelectric Point: 7.5981

>NTDB_id=912012 U0021_RS03040 WP_114800265.1 691226..692740(-) (comM) [Moraxella canis strain HAMBI_2792]
MSFAKVFTRSVVGLQAPQVFVEVHLSQGLPALTIVGLPEASVRESKDRVRSALINSGYEFPNRRLTINLAPADLPKDGAR
LDLPIAMGILAASGQIDDKVLADFEFVGELALNGELRPVSGALAIARAIKSARHDDKPRTLIMPSMNACEAVKVGDMTVL
AADHLAAVCRHLDVVSGISQNQADVLPIATLPHQPQVTQYAYDLADVKGQHHARRALEIAAAGGHSILFTGSPGSGKTLM
ASRLPSILPPLTEAEALEVASIYSIAGAEYAFGERPFRAIHHTISATALVGGGSKPKPGEISLAHKGAIFLDEIPEFDRK
TLETLRQPIESKQITISRANAQVSFPADFQLIAAMNPCPCGYHGDTTNRCRCRPEQIKKYQDKLSGPLLDRIDLHITVPA
LPIEDLQSAPKGESSDEVRQRVVAARDMAVTRQGKANYELTASELDQVAILGHQEQQMLKMAQSKLNLSARSYHRILRVA
RTIADLAASEHIKTAHVAEALSYR

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=912012 U0021_RS03040 WP_114800265.1 691226..692740(-) (comM) [Moraxella canis strain HAMBI_2792]
ATGTCATTTGCCAAAGTTTTTACGCGTTCGGTTGTTGGATTACAGGCGCCGCAAGTATTTGTTGAAGTTCATCTCTCCCA
AGGGCTGCCAGCCTTAACCATCGTCGGGCTGCCCGAAGCTTCGGTACGCGAGAGTAAGGATCGGGTGCGATCGGCGCTGA
TTAATTCAGGATATGAATTTCCCAATCGCCGCTTGACGATCAATCTTGCGCCTGCCGATCTGCCAAAAGATGGGGCGAGA
CTGGATCTACCGATTGCGATGGGTATTTTGGCTGCCAGCGGTCAGATTGATGATAAGGTCTTGGCAGATTTTGAATTTGT
GGGAGAGCTTGCGCTCAATGGCGAGCTTAGACCTGTTTCTGGTGCACTTGCTATTGCTCGCGCCATTAAGTCTGCCCGTC
ATGATGACAAGCCTCGCACGCTGATTATGCCAAGTATGAACGCCTGTGAAGCGGTGAAGGTGGGCGATATGACGGTGCTT
GCCGCTGATCATTTGGCGGCGGTTTGTCGTCATTTGGATGTGGTGAGCGGCATCAGCCAAAATCAAGCGGATGTCTTGCC
GATAGCGACTTTGCCACATCAGCCCCAAGTGACGCAGTATGCGTATGATTTGGCAGATGTCAAAGGGCAGCATCATGCAC
GCCGAGCGCTTGAGATTGCGGCGGCTGGCGGTCACTCGATACTATTTACAGGGTCACCTGGATCAGGCAAGACTTTGATG
GCATCGCGCCTGCCTAGTATTTTGCCGCCCCTGACCGAGGCAGAAGCCTTGGAGGTGGCGAGCATCTACTCGATTGCAGG
CGCGGAGTATGCCTTTGGCGAGCGACCTTTTCGTGCCATCCACCACACCATCTCTGCCACCGCTTTGGTTGGCGGCGGCT
CAAAACCCAAACCTGGTGAGATAAGCCTAGCCCACAAAGGTGCAATTTTCCTTGATGAGATTCCAGAATTTGATCGTAAA
ACACTCGAAACCTTGCGCCAGCCCATCGAGTCCAAGCAGATTACCATCTCTCGCGCTAATGCTCAGGTGTCATTTCCTGC
TGATTTTCAGCTGATCGCTGCCATGAACCCTTGCCCTTGTGGGTATCACGGCGACACCACGAACCGCTGCCGCTGCCGAC
CTGAGCAAATTAAAAAATATCAAGATAAACTATCAGGACCTTTGCTAGATCGCATCGATTTACATATTACCGTACCTGCT
TTGCCCATCGAGGATTTACAAAGCGCGCCAAAGGGTGAGTCATCAGATGAGGTTCGTCAAAGAGTCGTGGCAGCACGCGA
TATGGCAGTGACCCGTCAAGGCAAAGCCAATTATGAGCTGACAGCCAGTGAGCTTGATCAAGTCGCCATATTGGGTCATC
AAGAACAGCAAATGCTCAAGATGGCTCAATCCAAGCTTAACTTGTCTGCTCGCAGCTACCACCGCATCTTACGCGTGGCG
CGCACCATTGCGGATTTGGCTGCCAGCGAGCACATCAAAACAGCGCATGTGGCAGAAGCTTTAAGCTATCGATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila strain ERS1305867

51.468

100

0.522
  comM Legionella pneumophila str. Paris

51.468

100

0.522
  comM Glaesserella parasuis strain SC1401

51.068

100

0.522
  comM Haemophilus influenzae Rd KW20

51.072

100

0.52
  comM Vibrio cholerae strain A1552

49.606

100

0.5
  comM Vibrio campbellii strain DS40M4

49.213

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.487

100

0.456