Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   U0544_RS11035 Genome accession   NZ_CP139944
Coordinates   2157883..2158590 (-) Length   235 a.a.
NCBI ID   WP_002121606.1    Uniprot ID   -
Organism   Acinetobacter pittii strain CARB128     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2152883..2163590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS11015 (U0544_11045) purA 2153965..2155284 (+) 1320 WP_002121613.1 adenylosuccinate synthase -
  U0544_RS11020 (U0544_11050) - 2155407..2155724 (+) 318 WP_002121533.1 hypothetical protein -
  U0544_RS11025 (U0544_11055) - 2155840..2156619 (+) 780 WP_002121572.1 M48 family metallopeptidase -
  U0544_RS11030 (U0544_11060) tas 2156674..2157723 (-) 1050 WP_002121558.1 NADP(H)-dependent aldo-keto reductase -
  U0544_RS11035 (U0544_11065) crp 2157883..2158590 (-) 708 WP_002121606.1 cAMP-activated global transcriptional regulator CRP Regulator
  U0544_RS11040 (U0544_11070) - 2158831..2158950 (+) 120 WP_002121587.1 hypothetical protein -
  U0544_RS11045 (U0544_11075) - 2159029..2159451 (+) 423 WP_002121528.1 OsmC family protein -
  U0544_RS11050 (U0544_11080) phnO 2159548..2159973 (+) 426 WP_005802684.1 GNAT family N-acetyltransferase -
  U0544_RS11055 (U0544_11085) - 2159970..2160779 (-) 810 WP_002121535.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26483.06 Da        Isoelectric Point: 4.5853

>NTDB_id=911933 U0544_RS11035 WP_002121606.1 2157883..2158590(-) (crp) [Acinetobacter pittii strain CARB128]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGLQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTVSDDDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=911933 U0544_RS11035 WP_002121606.1 2157883..2158590(-) (crp) [Acinetobacter pittii strain CARB128]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTGCGTGAAGATGATGAACGTGAAATTGTTGTTGCGTATTTAAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGAACTCGTGATGTCTGTGAAATTGCAGA
GATCTCTTATGACAACTTCCACGAACTTAGCAAACAATACCCAGACTTAAGCTATGCTGTTTTTGCACAATTAGTTCGCC
GTCTAAAAAATACGACTCGTAAAATGACAGATCTTGCGTTCATTGATGTGTCTGGCCGTATTGCACGTTGTTTAATCGAT
CTATCTTCTCAACCAGAAGCAATGATTTTGCCAAACGGTCTTCAAATTCGCATTACTCGTCAAGAAATTGGCCGTATTGT
TGGATGTTCGCGTGAGATGGTTGGCCGTGTACTCAAAACCTTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCCA
TTCTTATTTTTGATGCATCATTAGAAGAAAACACTGTTTCTGATGATGACTACGACGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.021

100

0.97
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404