Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABVR74_RS11960 Genome accession   NZ_CP159484
Coordinates   2415122..2416381 (+) Length   419 a.a.
NCBI ID   WP_058222949.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CBA3648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2410122..2421381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR74_RS11930 (ABVR74_11930) prmA 2410475..2411428 (-) 954 WP_058202929.1 50S ribosomal protein L11 methyltransferase -
  ABVR74_RS11935 (ABVR74_11935) - 2411446..2411934 (-) 489 WP_098395976.1 YdeI/OmpD-associated family protein -
  ABVR74_RS11940 (ABVR74_11940) - 2411972..2412256 (-) 285 WP_353891706.1 hypothetical protein -
  ABVR74_RS11945 (ABVR74_11945) - 2412387..2413940 (-) 1554 WP_058221152.1 ABC-F family ATP-binding cassette domain-containing protein -
  ABVR74_RS11950 (ABVR74_11950) - 2413970..2414437 (-) 468 WP_010905112.1 DUF3013 family protein -
  ABVR74_RS11955 (ABVR74_11955) - 2414590..2415078 (+) 489 WP_058213361.1 GNAT family N-acetyltransferase -
  ABVR74_RS11960 (ABVR74_11960) rarA 2415122..2416381 (+) 1260 WP_058222949.1 replication-associated recombination protein A Machinery gene
  ABVR74_RS11965 (ABVR74_11965) spo0J 2416436..2417221 (+) 786 WP_021722894.1 ParB/RepB/Spo0J family partition protein Regulator
  ABVR74_RS11970 (ABVR74_11970) - 2417271..2419052 (-) 1782 WP_021722893.1 heavy metal translocating P-type ATPase -
  ABVR74_RS11975 (ABVR74_11975) rpmF 2419416..2419589 (+) 174 WP_010905107.1 50S ribosomal protein L32 -
  ABVR74_RS11980 (ABVR74_11980) rpmG 2419619..2419768 (+) 150 WP_003132258.1 50S ribosomal protein L33 -
  ABVR74_RS11985 (ABVR74_11985) - 2420335..2420502 (+) 168 WP_003132257.1 lactococcin family bacteriocin -
  ABVR74_RS11990 (ABVR74_11990) - 2420504..2420806 (+) 303 WP_003132256.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46782.08 Da        Isoelectric Point: 5.6008

>NTDB_id=911694 ABVR74_RS11960 WP_058222949.1 2415122..2416381(+) (rarA) [Lactococcus lactis subsp. lactis strain CBA3648]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVD
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=911694 ABVR74_RS11960 WP_058222949.1 2415122..2416381(+) (rarA) [Lactococcus lactis subsp. lactis strain CBA3648]
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCTTTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGTCAGCTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAGAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACTATTGACGATGATGCACTTTACTTTTTAATTCATTC
GACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACATCATGTCACTTTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAGGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)

AAA C-terminal domain (AAA_assoc_2)

(173-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.479

100

0.599