Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ABVR74_RS02680 Genome accession   NZ_CP159484
Coordinates   505109..505606 (+) Length   165 a.a.
NCBI ID   WP_353891932.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CBA3648     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 500109..510606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR74_RS02650 (ABVR74_02650) - 500311..502551 (+) 2241 WP_353891758.1 glycoside hydrolase domain-containing protein -
  ABVR74_RS02655 (ABVR74_02655) - 502581..502874 (-) 294 WP_025017162.1 hypothetical protein -
  ABVR74_RS02660 (ABVR74_02660) - 503091..503381 (+) 291 WP_124175219.1 hypothetical protein -
  ABVR74_RS02665 (ABVR74_02665) - 503371..503625 (+) 255 WP_023189062.1 phage holin -
  ABVR74_RS02670 (ABVR74_02670) - 503731..504633 (+) 903 WP_230593160.1 peptidoglycan amidohydrolase family protein -
  ABVR74_RS02675 (ABVR74_02675) - 504827..504952 (+) 126 WP_353891759.1 hypothetical protein -
  ABVR74_RS02680 (ABVR74_02680) endA 505109..505606 (+) 498 WP_353891932.1 hypothetical protein Machinery gene
  ABVR74_RS02685 (ABVR74_02685) - 505697..506146 (-) 450 WP_058223250.1 GNAT family N-acetyltransferase -
  ABVR74_RS02690 (ABVR74_02690) - 506295..507410 (+) 1116 WP_010906150.1 AI-2E family transporter -
  ABVR74_RS02695 (ABVR74_02695) - 507532..508881 (+) 1350 WP_058223249.1 hemolysin family protein -
  ABVR74_RS02700 (ABVR74_02700) pflA 509087..509881 (+) 795 WP_003130318.1 pyruvate formate-lyase-activating protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18648.11 Da        Isoelectric Point: 9.4109

>NTDB_id=911630 ABVR74_RS02680 WP_353891932.1 505109..505606(+) (endA) [Lactococcus lactis subsp. lactis strain CBA3648]
MQGRPYLGEAVLPKSIQNNEKDNKDEKVIPQFGWGQKSNLKGFYKKAYTKGFLLNSKLIGGVKDFNDSGSNMENIFTQTV
WASEANDSSSKGQKYFENMIHKVQDKNMIIKYRVKALYDGSNLVPSGTEIEAKSDDFSLEIHVFIPNVQPNLKVDYKTGQ
VTEVK

Nucleotide


Download         Length: 498 bp        

>NTDB_id=911630 ABVR74_RS02680 WP_353891932.1 505109..505606(+) (endA) [Lactococcus lactis subsp. lactis strain CBA3648]
ATTCAAGGGCGTCCTTATTTGGGTGAAGCAGTTCTCCCAAAATCTATTCAAAATAATGAAAAGGATAATAAAGATGAAAA
AGTGATTCCTCAATTTGGTTGGGGACAAAAATCTAACTTGAAAGGCTTCTATAAAAAAGCTTATACTAAAGGTTTTTTGC
TAAATAGTAAACTAATAGGTGGCGTTAAAGATTTCAATGATAGCGGGTCAAATATGGAAAATATATTTACTCAAACGGTT
TGGGCGAGTGAAGCTAATGATTCAAGTTCCAAGGGACAAAAATATTTTGAAAATATGATTCATAAAGTTCAAGATAAGAA
TATGATCATCAAGTATAGAGTTAAAGCACTCTATGATGGAAGTAACCTTGTCCCATCAGGAACTGAAATAGAAGCAAAAT
CTGATGATTTTTCACTCGAGATACATGTTTTTATTCCAAATGTTCAACCAAATCTTAAAGTAGATTATAAAACAGGTCAG
GTCACTGAAGTCAAATAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclea_NS_2)

(65-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

44.512

99.394

0.442
  endA Streptococcus pneumoniae D39

44.512

99.394

0.442
  endA Streptococcus pneumoniae R6

44.512

99.394

0.442
  endA Streptococcus pneumoniae TIGR4

44.512

99.394

0.442