Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   U0447_RS03505 Genome accession   NZ_CP139861
Coordinates   677603..678529 (-) Length   308 a.a.
NCBI ID   WP_001291297.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2017-2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 672603..683529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0447_RS03485 treR 673730..674440 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  U0447_RS03490 - 674472..675275 (-) 804 WP_000157673.1 ABC transporter ATP-binding protein -
  U0447_RS03495 - 675288..676165 (-) 878 Protein_690 ABC transporter permease -
  U0447_RS03500 - 676177..677115 (-) 939 Protein_691 ABC transporter substrate-binding protein -
  U0447_RS03505 amiF 677603..678529 (-) 927 WP_001291297.1 ATP-binding cassette domain-containing protein Regulator
  U0447_RS03510 amiE 678540..679607 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  U0447_RS03515 amiD 679616..680542 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  U0447_RS03520 amiC 680542..682038 (-) 1497 WP_000759902.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34822.89 Da        Isoelectric Point: 6.6224

>NTDB_id=911393 U0447_RS03505 WP_001291297.1 677603..678529(-) (amiF) [Streptococcus pneumoniae strain 16H2017-2]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAPELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=911393 U0447_RS03505 WP_001291297.1 677603..678529(-) (amiF) [Streptococcus pneumoniae strain 16H2017-2]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTCCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGATCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844