Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SUT_RS03730 Genome accession   NZ_AP025331
Coordinates   761070..761912 (+) Length   280 a.a.
NCBI ID   WP_155970840.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-183     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 756070..766912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUT_RS03700 (GUT183_06920) - 756278..757156 (+) 879 WP_237373561.1 F0F1 ATP synthase subunit gamma -
  SUT_RS03705 (GUT183_06930) atpD 757328..758734 (+) 1407 WP_024532406.1 F0F1 ATP synthase subunit beta -
  SUT_RS03710 (GUT183_06940) - 758744..759160 (+) 417 WP_120171525.1 F0F1 ATP synthase subunit epsilon -
  SUT_RS03715 - 759324..759551 (+) 228 WP_032537890.1 DUF1146 family protein -
  SUT_RS03720 (GUT183_06950) murA 759573..760856 (+) 1284 WP_155969961.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SUT_RS03725 (GUT183_06960) - 760849..761040 (+) 192 WP_120171528.1 DNA-directed RNA polymerase subunit beta -
  SUT_RS03730 (GUT183_06970) endA 761070..761912 (+) 843 WP_155970840.1 DNA/RNA non-specific endonuclease Machinery gene
  SUT_RS03735 (GUT183_06980) - 762101..763654 (+) 1554 WP_120171530.1 MFS transporter -
  SUT_RS03740 (GUT183_06990) - 763898..764926 (+) 1029 WP_156008171.1 sugar kinase -
  SUT_RS03745 (GUT183_07000) uidA 764942..766732 (+) 1791 WP_155964528.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 30396.05 Da        Isoelectric Point: 9.9448

>NTDB_id=91136 SUT_RS03730 WP_155970840.1 761070..761912(+) (endA) [Streptococcus ruminantium strain GUT-183]
MAKKNVKKQAMSLFSLLATLIVVGGGYFLSSTTNSNVTNHPYYVNQSKASESVPSQELASSVLTENVKKQLGTKIEWNGA
GAFFINGNKTNLDASVASAPYGENKTKIVQGKMVPTVANALLAKSTRQYKDRDETGKGRTSWTPAGWHQIHGLSGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQASTGQNYFESQIRRALDKNKRVRYRVTLIYAEDNDLIPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYRTGKITVNPH

Nucleotide


Download         Length: 843 bp        

>NTDB_id=91136 SUT_RS03730 WP_155970840.1 761070..761912(+) (endA) [Streptococcus ruminantium strain GUT-183]
GTGGCAAAGAAAAATGTAAAAAAACAAGCCATGAGTTTGTTTAGTTTGTTGGCCACACTCATTGTAGTGGGTGGAGGCTA
CTTTCTAAGCAGTACGACGAATAGTAATGTTACGAATCATCCTTACTATGTCAATCAATCCAAAGCTAGTGAATCAGTAC
CAAGTCAAGAATTGGCTAGCTCAGTATTGACAGAAAATGTAAAAAAGCAACTCGGAACTAAGATTGAGTGGAACGGAGCA
GGTGCTTTCTTCATTAATGGGAATAAAACCAATCTAGATGCATCGGTAGCTAGTGCTCCTTATGGAGAAAATAAAACCAA
GATTGTACAGGGAAAAATGGTACCGACGGTTGCAAATGCTCTTTTAGCAAAATCAACCCGTCAGTACAAGGACCGAGATG
AAACAGGAAAGGGGCGTACCTCTTGGACTCCTGCTGGCTGGCATCAGATTCATGGCTTATCAGGGGAATATGATCATGCA
GTTGATCGAGGCCATTTACTAGGCTATGCCTTGATTGGTGGACTTTCTGGTTTTGATGCTTCAACAAGCAATCCTAAGAA
CATAGCTGTTCAGACAGCTTGGTCCAATCAAGCCAATGACCAAGCTTCTACCGGGCAAAATTATTTTGAAAGTCAGATTC
GTCGGGCGTTGGATAAAAATAAGCGTGTCCGCTACCGTGTGACACTGATTTATGCAGAGGACAATGACTTGATTCCAGTT
GGGAGTCATTTAGAAGCAAAAGCAGCAGATGGAAGTCTAGAATTTAATGTTTTTGTTCCAAATGTACAAAGTGGTTTGAG
TATCAATTATCGTACTGGTAAGATTACAGTCAATCCCCACTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.234

91.429

0.596
  endA Streptococcus pneumoniae D39

65.234

91.429

0.596
  endA Streptococcus pneumoniae R6

65.234

91.429

0.596
  endA Streptococcus pneumoniae TIGR4

65.234

91.429

0.596

Multiple sequence alignment