Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   U0448_RS03680 Genome accession   NZ_CP139860
Coordinates   729350..730381 (-) Length   343 a.a.
NCBI ID   WP_016398613.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 21011     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 724350..735381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0448_RS03630 - 724432..725193 (-) 762 WP_219600156.1 SDR family oxidoreductase -
  U0448_RS03635 ytpR 725235..725861 (-) 627 WP_000578286.1 YtpR family tRNA-binding protein -
  U0448_RS03640 - 725877..726194 (-) 318 WP_000615776.1 thioredoxin family protein -
  U0448_RS03645 - 726191..726490 (-) 300 WP_001818001.1 DUF4651 domain-containing protein -
  U0448_RS03650 - 726584..726715 (+) 132 WP_001811306.1 hypothetical protein -
  U0448_RS10725 - 726827..726976 (-) 150 Protein_704 cell wall-binding protein -
  U0448_RS03660 - 727182..727856 (-) 675 WP_000725750.1 LiaF transmembrane domain-containing protein -
  U0448_RS03665 - 727862..728308 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  U0448_RS03670 - 728422..728925 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  U0448_RS03675 - 728922..729284 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  U0448_RS03680 rcrQ 729350..730381 (-) 1032 WP_016398613.1 ABC transporter ATP-binding protein Regulator
  U0448_RS03685 - 730425..731129 (-) 705 Protein_710 ABC transporter permease -
  U0448_RS03690 - 731146..731617 (-) 472 Protein_711 MarR family winged helix-turn-helix transcriptional regulator -
  U0448_RS03695 - 731741..732457 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  U0448_RS03700 ply 733338..734753 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  U0448_RS03705 - 734764..735174 (-) 411 WP_000595758.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37904.09 Da        Isoelectric Point: 4.4764

>NTDB_id=911321 U0448_RS03680 WP_016398613.1 729350..730381(-) (rcrQ) [Streptococcus pneumoniae strain 21011]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVVAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=911321 U0448_RS03680 WP_016398613.1 729350..730381(-) (rcrQ) [Streptococcus pneumoniae strain 21011]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTACAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCGTTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.357

65.306

0.525
  rcrP Streptococcus mutans UA159

38.15

100

0.385