Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HX0037_RS01170 Genome accession   NZ_CP139782
Coordinates   341749..342528 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 336749..347528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS01140 fliH 336793..337548 (-) 756 WP_094246938.1 flagellar assembly protein FliH -
  HX0037_RS01145 fliG 337541..338557 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  HX0037_RS01150 fliF 338570..340180 (-) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  HX0037_RS01155 fliE 340223..340543 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  HX0037_RS01160 flgC 340554..341006 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  HX0037_RS01165 flgB 341006..341395 (-) 390 WP_094246939.1 flagellar basal body rod protein FlgB -
  HX0037_RS01170 codY 341749..342528 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HX0037_RS01175 hslU 342566..343969 (-) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  HX0037_RS01180 hslV 343986..344531 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  HX0037_RS01185 xerC 344547..345464 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  HX0037_RS01190 trmFO 345534..346841 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=910940 HX0037_RS01170 WP_003154263.1 341749..342528(-) (codY) [Bacillus amyloliquefaciens strain HX0037]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=910940 HX0037_RS01170 WP_003154263.1 341749..342528(-) (codY) [Bacillus amyloliquefaciens strain HX0037]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471