Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   UM396_RS13055 Genome accession   NZ_CP139723
Coordinates   2538281..2540638 (-) Length   785 a.a.
NCBI ID   WP_063167296.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain OXR-76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2533281..2545638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UM396_RS13030 (UM396_13030) ahpC 2533778..2534341 (-) 564 WP_020960702.1 alkyl hydroperoxide reductase subunit C -
  UM396_RS13035 (UM396_13035) - 2534696..2534869 (-) 174 WP_168157871.1 hypothetical protein -
  UM396_RS13040 (UM396_13040) dtd 2534949..2535407 (-) 459 WP_063165167.1 D-aminoacyl-tRNA deacylase -
  UM396_RS13045 (UM396_13045) - 2535430..2537628 (-) 2199 WP_081208420.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  UM396_RS13050 (UM396_13050) - 2537769..2538281 (-) 513 WP_063165165.1 adenine phosphoribosyltransferase -
  UM396_RS13055 (UM396_13055) recJ 2538281..2540638 (-) 2358 WP_063167296.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  UM396_RS13060 (UM396_13060) - 2540696..2541598 (-) 903 WP_322310311.1 cation diffusion facilitator family transporter -
  UM396_RS13065 (UM396_13065) secDF 2541743..2543995 (-) 2253 WP_063165163.1 protein translocase subunit SecDF -
  UM396_RS13070 (UM396_13070) - 2544106..2544396 (-) 291 WP_063165162.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 86703.06 Da        Isoelectric Point: 5.5079

>NTDB_id=910730 UM396_RS13055 WP_063167296.1 2538281..2540638(-) (recJ) [Geobacillus subterraneus strain OXR-76]
MLKAKTRWEVNRPDEQTVKRLAEEAGIAPLMARLLVRRGVRTAAEAAAFLDPLGQPFHDPFLLDGMERAIQRLERAIDAG
ELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNLTAFRAAKERGVSVIVTVDNGIAAVNEIAAANEW
GLDVIVTDHHEPGPVLPEAYAIIHPKKPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLL
AAQGLEALRKTDRAGLRALWRQCRIDAATVNEQTVGFAIAPRLNAAGRLGGADPAVALLMTDDEDEAARLAQEMDELNRE
RQQLVAQMAEEAAEMVRRQFPPEEHRVLVVAGEGWNPGVVGIVASKLVEQFYRPAVVLSADREKGIAKGSARSIHSFDLF
SSLSQCRDILPHFGGHPMAAGMTLALDDVEELRERLNDIAARTLSDDDFTPPTFIDAACSVAELTLSAARSFERLAPFGV
GNPRPLLLIEEAAVETMRRVGANGAHMKAVFSQDGATVDAIGFGLGPFCEEIAPGARVSAVGELTVNEWNGLAKPQLALC
DVAVSGCQLFDARGCRDVRPLLERLPKEKRLLVLFRRETENRLDLAAFRDELHYVPSDEEAGALVIDGRYVVLLDLPPKL
GRLAALLGNGQPERIYAVFAQPEAQFFRTFPTRDHFKWFYAFLHKYRSFPLTERGGQLARARGWTEETVHFMAKVFLELE
FIREQNGVISLVRTPAKRDLHESPTYRRRRDELEVEHQLLYSTYEQLKRCLTEMTRSQTYEEANV

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=910730 UM396_RS13055 WP_063167296.1 2538281..2540638(-) (recJ) [Geobacillus subterraneus strain OXR-76]
ATGTTAAAAGCGAAAACGCGTTGGGAAGTCAATCGCCCTGACGAACAGACGGTGAAGCGGCTGGCCGAGGAAGCCGGCAT
CGCGCCGTTGATGGCAAGGCTTCTTGTTCGCCGCGGCGTGCGGACGGCGGCGGAAGCGGCCGCGTTTCTCGATCCGCTCG
GACAGCCGTTTCACGACCCGTTTTTGCTCGACGGGATGGAGCGGGCGATCCAGCGTTTAGAGCGGGCCATCGACGCCGGC
GAACTTGTGCTTGTCTATGGCGACTATGATGCCGATGGCGTCTGCAGTACGTCGGTGATGGTGAGCGCTCTGAAAGAGGC
GGGGGCGTCGGTTGAGTTCTACATTCCCAACCGCTTTACGGAAGGATACGGTCCGAATCTGACGGCATTTCGCGCCGCAA
AAGAGCGGGGCGTTTCCGTGATTGTGACCGTCGACAACGGGATTGCCGCGGTCAATGAAATCGCCGCCGCTAACGAGTGG
GGGCTTGATGTCATTGTGACCGACCACCATGAACCCGGTCCGGTATTACCGGAGGCGTACGCGATCATTCATCCAAAAAA
GCCGGGAAGTACATATCCGTTTCGCGATTTAGCCGGCGTCGGCGTCGCATTTAAGGTGGCCCACGCATTGCTTGGGCGGG
TGCCGCGCCATCTGCTTGATTTGGTAGCGATCGGGACGATCGCCGACTTAGTGCCGCTCGTTGGAGAAAACCGCCTCCTT
GCCGCGCAAGGGCTTGAGGCGCTGCGCAAAACGGATCGCGCCGGGTTGCGTGCCCTTTGGCGGCAATGCCGCATTGATGC
GGCGACAGTCAACGAGCAGACGGTCGGTTTTGCCATCGCGCCGCGGCTGAATGCGGCCGGCCGCCTCGGCGGTGCCGATC
CGGCTGTGGCGCTGCTAATGACAGATGATGAGGACGAAGCGGCCCGATTGGCCCAAGAGATGGACGAGCTAAACCGTGAA
CGCCAGCAGCTTGTGGCGCAAATGGCGGAAGAAGCGGCGGAGATGGTGCGGCGCCAGTTTCCGCCTGAGGAGCATCGCGT
TCTTGTTGTCGCCGGTGAAGGATGGAATCCGGGGGTTGTCGGCATCGTCGCCTCGAAGCTTGTTGAGCAGTTTTACCGTC
CGGCAGTCGTGCTTTCGGCCGATCGGGAAAAAGGGATCGCCAAAGGCTCGGCTCGCAGCATCCATAGCTTTGACCTTTTT
TCCAGTCTGTCCCAATGTCGTGACATTTTGCCGCATTTTGGCGGCCATCCGATGGCGGCGGGAATGACCTTAGCGCTGGA
TGATGTGGAGGAATTGCGGGAGCGGTTGAATGATATCGCCGCTAGGACGTTGTCAGACGACGATTTTACGCCGCCGACGT
TCATCGATGCTGCCTGCTCTGTTGCCGAACTGACGCTGTCGGCCGCACGAAGCTTTGAGCGGCTCGCCCCGTTTGGCGTC
GGCAATCCGCGGCCGCTTCTGCTCATCGAGGAGGCGGCGGTTGAAACGATGCGGCGCGTCGGGGCGAACGGCGCCCATAT
GAAAGCCGTCTTTTCCCAAGACGGCGCAACGGTTGATGCCATTGGCTTCGGCCTCGGACCGTTCTGCGAGGAAATCGCTC
CAGGGGCGCGTGTGTCGGCCGTCGGAGAACTTACGGTGAACGAATGGAACGGGCTGGCGAAGCCGCAGCTGGCGTTGTGC
GATGTAGCGGTGAGCGGCTGCCAGCTGTTTGATGCCCGCGGCTGCCGCGACGTCCGCCCGCTTCTTGAACGGCTGCCGAA
AGAGAAGCGGCTGCTTGTCTTGTTTCGCCGCGAAACCGAAAATCGCTTGGATTTGGCGGCGTTTCGCGACGAACTTCATT
ATGTGCCAAGTGATGAAGAGGCGGGCGCCTTAGTGATTGACGGCCGCTATGTCGTGCTGCTTGACTTGCCGCCAAAGCTT
GGCCGGCTCGCCGCCCTGCTCGGCAACGGGCAGCCGGAGCGCATTTACGCGGTGTTCGCACAGCCGGAAGCGCAGTTTTT
CCGGACGTTTCCGACGCGCGACCATTTTAAATGGTTTTATGCTTTTTTGCATAAATACCGTTCGTTTCCGCTCACCGAGC
GGGGCGGGCAATTGGCGCGCGCCCGCGGCTGGACGGAAGAGACGGTTCATTTCATGGCGAAAGTGTTTTTAGAGCTTGAG
TTTATTCGCGAACAAAACGGCGTCATCTCACTCGTCCGTACACCGGCGAAGCGCGATTTGCATGAGTCGCCGACATACCG
ACGCCGACGGGATGAACTTGAGGTGGAACATCAGTTATTATATTCCACTTACGAGCAGTTGAAACGCTGTTTAACAGAAA
TGACACGTTCGCAAACGTACGAGGAGGCAAACGTATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-560)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(308-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.512

99.745

0.534