Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   UM396_RS12965 Genome accession   NZ_CP139723
Coordinates   2518589..2520943 (-) Length   784 a.a.
NCBI ID   WP_322310308.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain OXR-76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2513589..2525943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UM396_RS12940 (UM396_12940) alaS 2513595..2516231 (-) 2637 WP_322310306.1 alanine--tRNA ligase -
  UM396_RS12945 (UM396_12945) - 2516548..2517609 (-) 1062 WP_322310307.1 AI-2E family transporter -
  UM396_RS12950 (UM396_12950) - 2517737..2517871 (-) 135 WP_081208394.1 YrzQ family protein -
  UM396_RS12955 (UM396_12955) - 2517883..2518074 (-) 192 WP_008881018.1 hypothetical protein -
  UM396_RS12960 (UM396_12960) - 2518090..2518563 (-) 474 WP_063165180.1 PRC-barrel domain-containing protein -
  UM396_RS12965 (UM396_12965) recD2 2518589..2520943 (-) 2355 WP_322310308.1 ATP-dependent RecD-like DNA helicase Machinery gene
  UM396_RS12970 (UM396_12970) - 2520961..2521623 (-) 663 WP_168368826.1 tetratricopeptide repeat protein -
  UM396_RS12975 (UM396_12975) mnmA 2521731..2522846 (-) 1116 WP_063165177.1 tRNA 2-thiouridine(34) synthase MnmA -
  UM396_RS12980 (UM396_12980) - 2522861..2524003 (-) 1143 WP_063165176.1 cysteine desulfurase family protein -
  UM396_RS12985 (UM396_12985) cymR 2524026..2524442 (-) 417 WP_063165175.1 cysteine metabolism transcriptional regulator CymR -
  UM396_RS12990 (UM396_12990) - 2524453..2525103 (-) 651 WP_210436899.1 YitT family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 86057.55 Da        Isoelectric Point: 4.9877

>NTDB_id=910729 UM396_RS12965 WP_322310308.1 2518589..2520943(-) (recD2) [Geobacillus subterraneus strain OXR-76]
MQEQQSLALDGRTFMKGTCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLNEGDVYVFYGQFRQHPRFGRQ
YAAEQFRKQLPNTKEGVIHYLSSGLFKGIGKKTAAAIVEVLGENAIATILRDPEALRRVPKLTKQKAKQLYETLCAHEGL
EQTMIALAQLGFGPQLAMKIYQVYGEETMDIIHENPYQLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
LQEGHVYMKEEELIGRMAELLGGRENGAVDGQAIGQTLLMLSEEGKMIMEQSRCYLPSLYFAEKGIASNIQRLLRQTPPS
AFAESEFLLALGALEERLGMQYAPQQKEAIQQALSSPLFILTGGPGTGKTTVIKGIVELFAALHGLSLDPADYKNDEPFP
VLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGVEGFSRDENEPIAGKLLVVDEVSMVDTWLANQLLKAVPDGMQVIFVG
DEDQLPSVGPGQVLKDLLESGVVPSVKLTEVYRQAEGSSIIELAHAMKRGVVPADLTAPKADRSFIRCRAGQVADVVRQI
ADNARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQGLFNPPADGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGEV
VAIFYAKENTEKQDLLVVSFDGVEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSKQ
FLILCGEEEAFRLGVAQRGDGARRTALAEKLAAASFVEGELPLADANTGMENVTPYDFMGDEPS

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=910729 UM396_RS12965 WP_322310308.1 2518589..2520943(-) (recD2) [Geobacillus subterraneus strain OXR-76]
TTGCAAGAGCAGCAATCGCTCGCGCTCGATGGACGCACGTTTATGAAAGGAACGTGTTTGGCCGTCATTTTCCATAACGA
AGAAACGTTATATACGGTCGTCCGCATCCGTGTCGAAGAAACAAATGAAGCGGCTGCGGAGGAGGAAGTGGTCGTCACCG
GTTATTTTCCTCGTTTAAATGAGGGGGACGTGTACGTTTTTTATGGGCAGTTCCGCCAGCATCCGCGCTTTGGCCGCCAA
TATGCGGCCGAGCAGTTCCGCAAACAGCTTCCAAACACGAAAGAAGGAGTTATCCATTATTTGTCAAGCGGCTTGTTTAA
AGGAATCGGAAAAAAGACGGCGGCAGCGATTGTGGAGGTGCTCGGCGAAAACGCGATCGCCACGATTTTGCGCGATCCGG
AGGCGCTTAGGCGCGTGCCGAAGCTGACGAAGCAAAAAGCGAAGCAATTGTATGAAACGCTTTGCGCCCACGAAGGGCTC
GAGCAGACGATGATCGCCCTCGCCCAGCTCGGCTTCGGTCCGCAGCTGGCGATGAAAATTTACCAAGTATACGGCGAAGA
GACGATGGACATCATTCATGAAAACCCGTACCAGCTCGTCGAAGACATTGAAGGGATCGGCTTTGGCCGCGCCGATGAGC
TTGGGCGGCAGCTCGGCATTTCCGGCAGCCACCCGGCCCGGCTGCGCGCCGCCTGCCTGTTTGTCCTTGAGCAGGCATGC
CTGCAAGAAGGGCACGTCTATATGAAAGAGGAAGAGCTCATCGGCCGCATGGCGGAGCTGCTTGGCGGAAGGGAAAACGG
AGCGGTCGATGGACAAGCCATCGGGCAGACGCTCCTCATGTTAAGCGAAGAAGGGAAGATGATCATGGAGCAAAGCCGCT
GTTATCTTCCCTCGCTTTACTTCGCCGAAAAAGGGATCGCTTCAAACATTCAGCGGCTGCTTAGGCAAACGCCGCCGTCG
GCGTTTGCCGAGTCGGAGTTTTTGCTTGCGCTCGGGGCGCTTGAGGAGCGGCTCGGGATGCAATACGCGCCCCAGCAAAA
AGAGGCAATCCAACAGGCCCTTTCTTCGCCGCTCTTTATTTTGACCGGCGGTCCGGGAACCGGAAAAACAACGGTCATTA
AAGGCATCGTCGAACTGTTTGCCGCCTTACACGGCCTGTCGCTCGACCCTGCCGATTACAAAAACGATGAACCGTTTCCC
GTGCTGCTCGCCGCTCCGACCGGACGGGCGGCAAAGCGGATGAGCGAGGCGACCGGGCTGCCGGCGGCAACGATTCACCG
GCTGCTTGGCTGGAATGGAGTGGAAGGATTCAGCCGCGATGAAAATGAGCCGATTGCCGGCAAGCTGCTTGTCGTCGATG
AAGTGTCGATGGTCGATACGTGGTTGGCCAATCAGCTGTTAAAAGCCGTGCCTGACGGAATGCAAGTCATCTTCGTTGGC
GACGAGGATCAGCTGCCATCGGTCGGCCCCGGGCAAGTGTTGAAAGATTTGCTTGAGTCGGGCGTCGTTCCATCGGTCAA
ACTGACCGAGGTGTACCGCCAAGCGGAAGGATCATCGATCATCGAGCTCGCCCATGCGATGAAGCGCGGCGTCGTGCCGG
CCGACTTGACCGCCCCGAAGGCGGATCGTTCGTTCATTCGTTGCCGCGCCGGACAAGTGGCTGATGTTGTGCGGCAAATT
GCTGACAACGCGCGCAACAAAGGGTTTTCCGTCAAGGACATTCAAGTGCTCGCTCCGATGTACCGCGGCCCGGCCGGCAT
CGATCAGCTGAACAAAGTGCTGCAGGGGCTGTTTAACCCGCCGGCTGACGGGAAACGGGAGCTTTCCGTCGGCGACGTTG
TGTACCGCGTCGGCGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAAGACAATGTGTTTAACGGCGATATCGGCGAAGTC
GTTGCCATTTTTTACGCCAAAGAAAATACGGAAAAGCAAGACTTGCTTGTTGTCTCGTTTGACGGCGTTGAAGTGACATA
CACAAGGCAAGATTTAGCGCAAATTACCCATGCGTATTGCTGCTCGGTCCATAAAGCGCAAGGGAGCGAGTTTCCAATCG
TCATTTTGCCTGTTGTCAAAAGCTACTACCGGATGTTGAAGCGGAATTTGTTGTATACGGCGGTGACAAGAAGCAAGCAG
TTTCTTATTTTATGCGGTGAAGAAGAAGCGTTCCGGTTGGGCGTTGCCCAACGCGGCGACGGAGCGCGCCGGACAGCGCT
CGCCGAAAAGTTGGCGGCTGCGTCGTTTGTTGAGGGGGAACTGCCGCTTGCGGATGCGAATACCGGGATGGAAAACGTTA
CGCCGTATGACTTTATGGGCGATGAGCCAAGCTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-660)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.95

100

0.607