Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OR601_RS03705 Genome accession   NZ_AP025285
Coordinates   840300..842099 (+) Length   599 a.a.
NCBI ID   WP_265592248.1    Uniprot ID   A0AAU9D1C8
Organism   Leptogranulimonas caecicola strain TOC12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 835300..847099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OR601_RS03685 (ATTO_07270) - 835880..836695 (+) 816 WP_265592245.1 DNA/RNA non-specific endonuclease -
  OR601_RS03690 (ATTO_07280) rpmB 836780..836974 (-) 195 WP_136012866.1 50S ribosomal protein L28 -
  OR601_RS03695 - 837263..837955 (+) 693 WP_265592246.1 MarR family winged helix-turn-helix transcriptional regulator -
  OR601_RS03700 (ATTO_07310) - 837952..840300 (+) 2349 WP_265592247.1 ABC transporter ATP-binding protein -
  OR601_RS03705 (ATTO_07320) rcrQ 840300..842099 (+) 1800 WP_265592248.1 ABC transporter ATP-binding protein Regulator
  OR601_RS03710 (ATTO_07330) - 842342..842686 (+) 345 WP_136012863.1 Asp23/Gls24 family envelope stress response protein -
  OR601_RS03715 (ATTO_07340) - 842745..844418 (+) 1674 WP_136012862.1 DAK2 domain-containing protein -
  OR601_RS03720 (ATTO_07350) recG 844429..846582 (+) 2154 WP_136012861.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 65475.27 Da        Isoelectric Point: 5.2092

>NTDB_id=91057 OR601_RS03705 WP_265592248.1 840300..842099(+) (rcrQ) [Leptogranulimonas caecicola strain TOC12]
MPGPVRHTTKRAKDFKGTLARLAAYAKPHWVPLLFAVACAILSVVFNVIGPDILGQVTTKLYEGLVAKVQGTGGIDFAGI
AHIMLFLIGLYLAAGAANFCQGILMTRVTQSVCFRLRGDIAEKIAHVPMSYFEGHSKGDVLSRVTNDVDTLGQSLNQAVT
QLVTSIAQVIGVLVMMFSISPVLAGLTLLVLPLSAVAILISVRFSQRFFVKQQQQLGQVNGIVEEDFAGQSVIAVFNQGE
RATQQFNKVNDQLCESAWKSQFLSGLMQPLMTFIGNMAYAMVVVVGAQLAISNVITIGDIQAFMQYVRNFTQPIQQLASI
SNVFQQMAAAAERVFEFLDAPVESEPQNSQLPAVRQGAVSFDNVSFGYLPGHTVIHDFSCQVKPGQTVAIVGPTGAGKTT
IMKLMMRFYDVDEGSLAVDGLDVRSWNREELRSNFAMVLQDTWLFEGTIRENIRYGRLDATDEEVEEAARIARCDHFIHT
LAGGYDFEINEGATNVSQGQRQLLTIARAVLADRPMLILDEATSNVDTRTEVLIQEAMDRLMAGRTSFVVAHRLSTIRNA
DVILVMEQGDVVESGTHEELLAQGGAYAKLYNSQFDGCE

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=91057 OR601_RS03705 WP_265592248.1 840300..842099(+) (rcrQ) [Leptogranulimonas caecicola strain TOC12]
ATGCCCGGTCCCGTACGCCATACCACCAAGCGCGCTAAAGACTTCAAGGGTACTTTGGCAAGGCTCGCCGCCTATGCCAA
GCCCCACTGGGTGCCGCTGCTGTTTGCGGTGGCCTGCGCCATTTTGAGTGTGGTCTTCAATGTCATTGGCCCCGACATCT
TGGGTCAGGTCACCACCAAGCTCTACGAGGGGCTGGTGGCCAAAGTCCAAGGCACCGGCGGCATCGACTTTGCAGGCATC
GCCCACATCATGCTGTTCCTTATTGGCCTCTACTTGGCGGCTGGAGCTGCGAACTTTTGCCAGGGCATCCTCATGACCCG
AGTCACCCAGTCAGTCTGCTTTAGGCTGAGAGGCGATATTGCCGAGAAGATCGCCCATGTCCCCATGAGCTATTTCGAGG
GTCACTCCAAAGGCGACGTGCTGAGCCGCGTCACCAACGATGTGGATACGTTGGGCCAGTCGCTCAACCAGGCGGTCACT
CAGCTGGTGACCAGCATCGCCCAGGTCATAGGCGTACTAGTGATGATGTTTTCCATCTCACCGGTGCTGGCGGGTCTCAC
CTTGCTGGTGTTGCCTTTATCGGCGGTTGCCATCCTCATCTCGGTGCGCTTCTCCCAGCGCTTCTTTGTGAAGCAACAGC
AACAGTTAGGCCAGGTAAACGGCATCGTGGAGGAAGACTTCGCCGGCCAGTCGGTGATCGCGGTCTTCAACCAGGGAGAA
CGTGCGACCCAACAGTTCAACAAGGTGAACGACCAGCTCTGCGAGAGTGCCTGGAAGAGTCAGTTCCTATCGGGTCTTAT
GCAGCCCCTGATGACCTTCATTGGTAACATGGCCTACGCCATGGTGGTGGTTGTAGGCGCCCAACTGGCCATATCCAATG
TCATCACCATCGGCGACATTCAGGCATTTATGCAGTATGTGCGCAACTTCACCCAGCCTATCCAGCAACTGGCTTCCATC
TCCAACGTCTTTCAGCAGATGGCGGCTGCCGCGGAGCGCGTCTTCGAGTTTTTGGATGCGCCGGTGGAGTCCGAGCCTCA
GAACTCGCAGCTGCCTGCGGTGCGCCAGGGCGCGGTGAGCTTTGATAACGTGAGCTTTGGCTATCTGCCGGGCCATACCG
TCATCCATGACTTCAGCTGCCAGGTGAAGCCCGGGCAAACGGTGGCCATCGTGGGCCCTACGGGCGCCGGCAAGACCACC
ATCATGAAGCTCATGATGCGCTTCTACGATGTGGATGAGGGCTCGCTTGCCGTGGATGGGTTAGATGTGCGCTCCTGGAA
CCGGGAAGAGCTGCGCTCCAACTTCGCCATGGTGCTTCAAGACACCTGGCTTTTCGAGGGCACCATCCGCGAGAACATCC
GCTATGGACGCCTGGACGCCACCGATGAAGAGGTGGAGGAGGCCGCCCGCATCGCGCGCTGCGACCACTTCATCCATACG
CTGGCAGGAGGCTATGACTTCGAAATCAACGAAGGGGCAACCAACGTGAGCCAGGGCCAGCGCCAGCTGCTCACCATCGC
TCGGGCAGTGCTGGCAGACAGGCCTATGCTCATCTTGGACGAGGCTACCTCAAACGTGGACACCCGCACAGAGGTGCTCA
TCCAAGAGGCCATGGACCGCCTGATGGCCGGACGCACCAGCTTTGTGGTGGCCCACAGGCTCTCCACCATCCGCAATGCA
GATGTGATCTTGGTCATGGAGCAGGGCGACGTGGTGGAGTCGGGCACCCATGAGGAGCTCTTGGCTCAAGGCGGCGCCTA
CGCCAAGCTCTACAACTCTCAGTTTGACGGCTGTGAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(376-524)

ABC transporter transmembrane region (ABC_membrane)

(33-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

49.828

97.162

0.484

Multiple sequence alignment